View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6638_low_17 (Length: 281)

Name: NF6638_low_17
Description: NF6638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6638_low_17
NF6638_low_17
[»] chr4 (26 HSPs)
chr4 (15-181)||(31307052-31307219)
chr4 (17-185)||(38766079-38766248)
chr4 (18-180)||(45994513-45994676)
chr4 (17-181)||(14854595-14854760)
chr4 (17-179)||(35972333-35972496)
chr4 (17-181)||(38844154-38844319)
chr4 (65-185)||(9012309-9012429)
chr4 (65-185)||(46016188-46016308)
chr4 (65-185)||(51626288-51626408)
chr4 (21-181)||(32005132-32005298)
chr4 (18-177)||(35334088-35334248)
chr4 (65-172)||(13948587-13948694)
chr4 (94-178)||(33529325-33529409)
chr4 (17-165)||(13686591-13686741)
chr4 (17-59)||(10199213-10199255)
chr4 (65-177)||(46250545-46250657)
chr4 (97-179)||(18841556-18841639)
chr4 (65-177)||(2434598-2434710)
chr4 (93-185)||(7096163-7096254)
chr4 (147-179)||(15133496-15133528)
chr4 (93-185)||(31308364-31308456)
chr4 (149-185)||(37241358-37241394)
chr4 (22-177)||(17135092-17135247)
chr4 (89-167)||(22017527-22017605)
chr4 (94-156)||(22189399-22189461)
chr4 (65-175)||(56447115-56447224)
[»] chr7 (24 HSPs)
chr7 (15-181)||(29059793-29059960)
chr7 (21-181)||(31492097-31492258)
chr7 (18-179)||(21747028-21747189)
chr7 (17-185)||(8839262-8839432)
chr7 (18-168)||(19477249-19477399)
chr7 (17-181)||(28537380-28537541)
chr7 (18-181)||(35707838-35708001)
chr7 (17-185)||(46373663-46373834)
chr7 (17-151)||(13254117-13254252)
chr7 (97-185)||(37339715-37339803)
chr7 (68-181)||(11486730-11486843)
chr7 (93-178)||(20207564-20207649)
chr7 (89-185)||(42741791-42741886)
chr7 (17-127)||(40099312-40099423)
chr7 (119-180)||(28665183-28665244)
chr7 (65-181)||(24172246-24172364)
chr7 (89-153)||(14545006-14545070)
chr7 (102-179)||(31776494-31776571)
chr7 (134-178)||(36821069-36821113)
chr7 (8-55)||(5905803-5905850)
chr7 (148-181)||(14552482-14552515)
chr7 (102-167)||(29428792-29428857)
chr7 (130-179)||(45778968-45779017)
chr7 (17-57)||(2657947-2657987)
[»] chr8 (16 HSPs)
chr8 (15-185)||(4125006-4125177)
chr8 (18-181)||(2743924-2744088)
chr8 (17-175)||(12958077-12958236)
chr8 (15-181)||(30935992-30936159)
chr8 (18-181)||(13468731-13468895)
chr8 (17-179)||(19715713-19715877)
chr8 (94-181)||(7839239-7839326)
chr8 (17-165)||(36994502-36994651)
chr8 (18-177)||(30055991-30056151)
chr8 (26-156)||(15682928-15683059)
chr8 (133-179)||(39086859-39086905)
chr8 (19-113)||(27121804-27121899)
chr8 (133-185)||(8521805-8521856)
chr8 (17-59)||(39086808-39086850)
chr8 (115-185)||(40320185-40320255)
chr8 (17-105)||(35206990-35207079)
[»] chr5 (14 HSPs)
chr5 (15-185)||(10591915-10592086)
chr5 (17-181)||(22187984-22188147)
chr5 (13-185)||(31113320-31113493)
chr5 (67-180)||(5123485-5123598)
chr5 (18-179)||(30784974-30785136)
chr5 (77-184)||(35774636-35774743)
chr5 (17-155)||(18909313-18909449)
chr5 (17-116)||(28023494-28023594)
chr5 (92-163)||(36212962-36213033)
chr5 (91-185)||(373746-373840)
chr5 (65-185)||(19329560-19329680)
chr5 (103-181)||(25983742-25983820)
chr5 (141-178)||(12682750-12682787)
chr5 (86-167)||(22402027-22402108)
[»] chr2 (26 HSPs)
chr2 (17-181)||(42745102-42745267)
chr2 (17-185)||(5394387-5394555)
chr2 (15-181)||(31579215-31579382)
chr2 (17-177)||(18105353-18105513)
chr2 (15-121)||(44732619-44732726)
chr2 (18-177)||(9438126-9438286)
chr2 (17-181)||(17981488-17981652)
chr2 (17-128)||(12133269-12133381)
chr2 (103-185)||(25423821-25423903)
chr2 (15-107)||(37568787-37568880)
chr2 (107-185)||(14551555-14551633)
chr2 (17-128)||(7157488-7157600)
chr2 (8-151)||(33756958-33757102)
chr2 (65-185)||(37179983-37180098)
chr2 (17-179)||(993744-993906)
chr2 (93-167)||(38743805-38743879)
chr2 (95-183)||(38372978-38373064)
chr2 (18-175)||(7020352-7020508)
chr2 (17-59)||(28365939-28365981)
chr2 (139-181)||(37092181-37092223)
chr2 (140-185)||(1682136-1682181)
chr2 (123-185)||(17655758-17655822)
chr2 (109-173)||(34386566-34386630)
chr2 (123-157)||(19252506-19252540)
chr2 (93-185)||(24412909-24413000)
chr2 (133-185)||(40688761-40688813)
[»] scaffold0182 (1 HSPs)
scaffold0182 (28-181)||(26332-26486)
[»] chr3 (21 HSPs)
chr3 (17-177)||(30995955-30996116)
chr3 (17-177)||(27763713-27763872)
chr3 (17-185)||(38331118-38331287)
chr3 (17-185)||(48204293-48204462)
chr3 (17-181)||(25224689-25224854)
chr3 (67-180)||(20861289-20861402)
chr3 (65-185)||(55123136-55123256)
chr3 (113-181)||(8757431-8757499)
chr3 (18-185)||(40294603-40294771)
chr3 (17-128)||(38088625-38088737)
chr3 (65-185)||(1642645-1642765)
chr3 (29-184)||(48210943-48211099)
chr3 (6-181)||(22288214-22288390)
chr3 (50-185)||(39950235-39950371)
chr3 (141-181)||(40318435-40318475)
chr3 (17-58)||(46604670-46604711)
chr3 (93-184)||(43621294-43621386)
chr3 (115-177)||(44941255-44941316)
chr3 (17-118)||(42514594-42514698)
chr3 (77-185)||(11767161-11767269)
chr3 (10-62)||(28967288-28967340)
[»] chr6 (18 HSPs)
chr6 (15-185)||(31412111-31412281)
chr6 (17-181)||(12411138-12411303)
chr6 (65-181)||(12836883-12836999)
chr6 (18-179)||(21910196-21910357)
chr6 (204-261)||(31412314-31412370)
chr6 (35-180)||(28099251-28099397)
chr6 (18-179)||(31107481-31107643)
chr6 (17-180)||(15614560-15614724)
chr6 (22-164)||(21028982-21029129)
chr6 (103-177)||(9536844-9536918)
chr6 (121-178)||(17177233-17177290)
chr6 (18-185)||(278383-278550)
chr6 (94-185)||(1534320-1534409)
chr6 (94-166)||(6062110-6062182)
chr6 (65-107)||(31868637-31868679)
chr6 (17-153)||(423645-423782)
chr6 (32-131)||(5944847-5944947)
chr6 (93-164)||(21028845-21028914)
[»] chr1 (24 HSPs)
chr1 (17-185)||(16756072-16756241)
chr1 (17-181)||(28724663-28724827)
chr1 (93-179)||(42297430-42297516)
chr1 (18-180)||(22022111-22022274)
chr1 (97-185)||(15642526-15642614)
chr1 (65-185)||(18428124-18428243)
chr1 (65-181)||(36806650-36806766)
chr1 (65-180)||(9780976-9781091)
chr1 (24-185)||(12035546-12035709)
chr1 (65-179)||(7242795-7242909)
chr1 (17-178)||(45806226-45806388)
chr1 (17-185)||(10750588-10750756)
chr1 (89-176)||(39547355-39547442)
chr1 (68-185)||(46864133-46864250)
chr1 (9-106)||(29124727-29124825)
chr1 (18-179)||(32534074-32534235)
chr1 (97-179)||(44913180-44913262)
chr1 (8-170)||(6607691-6607854)
chr1 (17-68)||(14500358-14500409)
chr1 (123-185)||(49071674-49071736)
chr1 (97-185)||(10367575-10367663)
chr1 (92-153)||(32883561-32883622)
chr1 (92-169)||(36086923-36087000)
chr1 (117-185)||(789805-789872)
[»] scaffold0009 (1 HSPs)
scaffold0009 (96-180)||(27212-27296)
[»] scaffold0013 (1 HSPs)
scaffold0013 (123-185)||(29134-29196)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 31307219 - 31307052
Alignment:
Q  15 cacttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagc 113  Q
    |||||||||||||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||| ||| || ||||||||||||||||||| |||||    
T  31307219 cacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagc 31307120  T
Q  114 ctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||||||| |||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31307119 ctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 31307052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 38766079 - 38766248
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggtc-gaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||||||||| ||||||| || ||||||||||||| |||||  ||||||||| |||| ||| || ||| ||||||||||||||| |||| ||    
T  38766079 cttagatgagatggaacgagtctcttctagcttaaccaaggtcctgggtttgaatccagccttgggcatgcagcagcgttaaaactcttagggagagtct 38766178  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    |||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38766179 gccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 38766248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 45994513 - 45994676
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctg 116  Q
    |||||||||||||||| |||||||| || ||||||||||||| ||| | |||||||||| |||| ||| |||||  ||||||||||||||| ||||||||    
T  45994513 ttagatgagatggaacaggtctcttctagcttaaccaaggtcctggattcgaatccagccttgggcatgcaacaacgttaaaactcttagggagagcctg 45994612  T
Q  117 ccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggataccc 180  Q
     |||| |||||| |||||||| ||||||| ||||||||||||||||||| |||  |||||||||    
T  45994613 acgcccatttgggtctcacaatgctcgagagattagtctccgcagttgcacgccaaggataccc 45994676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 14854595 - 14854760
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    ||||||||||||||||||| |||||| || ||||||||||||  ||||| |||||||||| |||| ||| || ||  ||||||||||||||| ||||| |    
T  14854595 cttagatgagatggaacggttctcttctagcttaaccaaggttctgggttcgaatccagccttgggcatgcagcatcgttaaaactcttagggagagctt 14854694  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||||| |||||| ||  ||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  14854695 gccgcccatttgggtccaacaattctcgagggattagtctctgcagttgcgcgcggaggatacccg 14854760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 35972333 - 35972496
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||||||||||| ||||| || ||||||||||||| ||||| ||||||||||  ||| |||||| ||| ||||||||| ||||| ||||  |    
T  35972333 cttagatgagatggaacgggcctcttctagcttaaccaaggtcttgggttcgaatccagccatgggcatacagcagcgttaaaactattagggagagttt 35972432  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacc 179  Q
    |||||| |||||| || ||| | | |||||||||||||||||||||||||| ||||||||||||    
T  35972433 gccgcccatttgggtcccactatgttcgagggattagtctccgcagttgcgtgcggaggatacc 35972496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 38844319 - 38844154
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||| ||||||||||||| ||||||| || |||||||||||||||| || ||||||||||||||| ||| |||||| |||||||||||||||||||| ||    
T  38844319 cttaaatgagatggaacgagtctcttctagcttaaccaaggtcatgagttcgaatccagctttgggcatgcaacagcgttaaaactcttaggaagagtct 38844220  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||||| |||||   | ||||| ||||||| ||||||||||  | ||| ||||| |||||||||||    
T  38844219 gccgcccatttgacccccacaatgctcgagagattagtctctactgttacgcgcagaggatacccg 38844154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 9012309 - 9012429
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    ||||||| ||| |||| ||| || ||||||| ||||||||||| ||||| ||||||| | |||| || ||||| ||||||||||||||||||||||||||    
T  9012309 tcgaatctagccttgggcatgcagcagtgttcaaactcttagggagagcttgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttg 9012408  T
Q  165 cgcgcggaggatacccgattt 185  Q
    |||||||||||||||||||||    
T  9012409 cgcgcggaggatacccgattt 9012429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 46016188 - 46016308
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    ||||||||||| |||| ||| || ||||||||||||||||||| ||||||||||||| |||||| || ||||| |||||| | ||||||||||| |||||    
T  46016188 tcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgaagaattagtctccgtagttg 46016287  T
Q  165 cgcgcggaggatacccgattt 185  Q
    |||| ||||||||||||||||    
T  46016288 cgcgtggaggatacccgattt 46016308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 51626408 - 51626288
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    ||||||||||| |||| ||| || ||||||||||||| ||||| |||| |||||| | |||||| || ||||  ||||||| ||||||||||||||||||    
T  51626408 tcgaatccagccttgggcatgcagcagtgttaaaacttttagggagagtctgccgtccatttgggtcccacagtgctcgagagattagtctccgcagttg 51626309  T
Q  165 cgcgcggaggatacccgattt 185  Q
    |||||||||||||||||||||    
T  51626308 cgcgcggaggatacccgattt 51626288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 32005298 - 32005132
Alignment:
Q  21 gatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaa-----cagtgttaaaactcttaggaagagcc 114  Q
    ||||||||||||  |||||||| |||||||||||| ||| || || ||||| ||||||||| ||| ||      ||||||||||||||||||| |||| |    
T  32005298 gatgagatggaataggtctcttctaacttaaccaaagtcctgagttcgaattcagctttgggcatgcattgcatcagtgttaaaactcttagggagagtc 32005199  T
Q  115 tgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||||||||||| ||||||| || ||||||| |||||||||||||| ||  ||||||||||||||||    
T  32005198 tgccgcctatttagatctcaaaatgctcgagagattagtctccgcaattatgcgcggaggatacccg 32005132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 35334248 - 35334088
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggt-catgggtcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctg 116  Q
    ||||||||||||||||  ||||||| || |||||||||||| | ||| ||| || |||| |||| ||| || ||| ||||||||||||||  |||| | |    
T  35334248 ttagatgagatggaacaagtctcttctagcttaaccaaggttcttggttcgtattcagccttgggcatgcagcagagttaaaactcttagagagagtccg 35334149  T
Q  117 ccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggata 177  Q
    ||||| |||||| || |||||  ||||||||||||||||||||||||||||| | ||||||    
T  35334148 ccgcccatttgggtcccacaatactcgagggattagtctccgcagttgcgcgtgaaggata 35334088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 13948694 - 13948587
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    ||||||||||| ||||  || || ||||||||||||||||||| |||| || ||| | ||||| ||||||||| |||||||||||||||||| |||||||    
T  13948694 tcgaatccagccttgggtatgcagcagtgttaaaactcttagggagagtctaccgtccatttgaatctcacaatgctcgagggattagtctctgcagttg 13948595  T
Q  165 cgcgcgga 172  Q
    ||||||||    
T  13948594 cgcgcgga 13948587  T

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Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 33529325 - 33529409
Alignment:
Q  94 ttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatac 178  Q
    |||||||||||||| ||||| ||||||| |||||| || |||||  || ||||||||||||||||||||||||| ||||||||||    
T  33529325 ttaaaactcttagggagagcttgccgcccatttgggtcccacaatactggagggattagtctccgcagttgcgcacggaggatac 33529409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 13686591 - 13686741
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactctta-ggaagagcc 114  Q
    |||||||||||||| | ||||||||| |  ||||||||||||| ||||| |||||||| | |||| | | || ||| ||||||||||||| || ||||      
T  13686591 cttagatgagatggcatgggtctcttcttgcttaaccaaggtcctgggttcgaatccatccttgggcgtgcagcagcgttaaaactcttaagggagagtt 13686690  T
Q  115 tgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgc 165  Q
    ||||| | |||||| |||||||| ||||||| ||||||||||| |||||||    
T  13686691 tgccgtccatttgggtctcacaaggctcgagagattagtctccacagttgc 13686741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 10199255 - 10199213
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtc 59  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10199255 cttagatgagatggaacgggtctcttataacttaaccaaggtc 10199213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 177
Target Start/End: Complemental strand, 46250657 - 46250545
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    ||||||||||  |||| ||| || ||||||||||||||||| | | ||||||||||| |||||| || ||| | |||||| | |||||||||||| ||||    
T  46250657 tcgaatccagtcttgggcatgcagcagtgttaaaactcttatggaaagcctgccgcccatttgggtcccacgatgctcgaagaattagtctccgcggttg 46250558  T
Q  165 cgcgcggaggata 177  Q
     ||| ||||||||    
T  46250557 tgcgtggaggata 46250545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 18841556 - 18841639
Alignment:
Q  97 aaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgc-agttgcgcgcggaggatacc 179  Q
    ||||||||||| ||||  ||||||| |||||||||  |||| |||| |||||||||||||||| |||||||| |||||||||||    
T  18841556 aaactcttaggtagagtttgccgccaatttggatcctacaaggctcaagggattagtctccgcaagttgcgcacggaggatacc 18841639  T

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Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 177
Target Start/End: Original strand, 2434598 - 2434710
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    ||||||||||| ||||||||||||||  ||||||||||||| ||| ||  || |||  |||| | ||  |||| ||||||| |||| || ||||||||||    
T  2434598 tcgaatccagccttggacatacaacaacgttaaaactcttacgaaaagtttgtcgctcatttaggtcctacaaggctcgagtgattggtatccgcagttg 2434697  T
Q  165 cgcgcggaggata 177  Q
    || ||||||||||    
T  2434698 cgggcggaggata 2434710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 185
Target Start/End: Original strand, 7096163 - 7096254
Alignment:
Q  93 gttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    ||||||||||||||| ||||| | ||||| |||| | ||| |||| |||| || ||||||||| | ||||||| |||||| ||||||||||||    
T  7096163 gttaaaactcttagggagagcttaccgcccatttaggtcttacaatgctcaagagattagtctgcacagttgcacgcgga-gatacccgattt 7096254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 15133496 - 15133528
Alignment:
Q  147 gattagtctccgcagttgcgcgcggaggatacc 179  Q
    |||||||||||||||||||||||||||||||||    
T  15133496 gattagtctccgcagttgcgcgcggaggatacc 15133528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 185
Target Start/End: Original strand, 31308364 - 31308456
Alignment:
Q  93 gttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    |||||||||||||||||||| |||||| |||||| | || ||||| | | ||||||||||||  | |||||| | |||||| |||||| ||||    
T  31308364 gttaaaactcttaggaagagtctgccgtctatttaggtcccacaatgtttgagggattagtcctctcagttgtgtgcggagaatacccaattt 31308456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 37241394 - 37241358
Alignment:
Q  149 ttagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    ||||||||||||||||||||||||||||||| |||||    
T  37241394 ttagtctccgcagttgcgcgcggaggatacctgattt 37241358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 17135092 - 17135247
Alignment:
Q  22 atgagatggaacgggtctcttataacttaaccaaggtcatgggtcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcc 121  Q
    ||||||||  ||| ||||||| || ||||| ||| ||| | | ||||||||||| |||  ||| || ||| ||||||||||||||| ||||  ||||||     
T  17135092 atgagatgacacgtgtctcttctagcttaatcaaagtcctagttcgaatccagccttgtgcatgcagcagcgttaaaactcttagggagagtttgccgcg 17135191  T
Q  122 tatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggata 177  Q
     |||||  || || ||  |||||||||||||||||   |||||||| |||||||||    
T  17135192 catttgagtcccagaagactcgagggattagtctcaaaagttgcgcacggaggata 17135247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 22017527 - 22017605
Alignment:
Q  89 cagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgc 167  Q
    |||||||||||| |||||| | ||| ||||||||||||| ||| ||||| | ||||| ||||| ||||  |||||||||    
T  22017527 cagtgttaaaacccttagggaaagcttgccgcctatttgaatcacacaatgatcgagcgattaatctctacagttgcgc 22017605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 22189461 - 22189399
Alignment:
Q  94 ttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctc 156  Q
    |||||||||||||| ||||  |||||||||| ||| || ||||| |||||||| |||||||||    
T  22189461 ttaaaactcttaggtagagattgccgcctatatgggtcccacaaggctcgaggaattagtctc 22189399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 175
Target Start/End: Complemental strand, 56447224 - 56447115
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    |||||||||||| ||| ||| || ||||||||||||||||||| ||||  |||  || ||||||||| |||||  || ||||||||| |||  ||| |||    
T  56447224 tcgaatccagctatgggcatgcagcagtgttaaaactcttagggagagtttgctacccatttggatc-cacaagacttgagggattaatctatgcaattg 56447126  T
Q  165 cgcgcggagga 175  Q
    ||||| |||||    
T  56447125 cgcgcagagga 56447115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 29059793 - 29059960
Alignment:
Q  15 cacttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagc 113  Q
    |||||||||||||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||| ||| || ||||||||||||||||||| |||||    
T  29059793 cacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagc 29059892  T
Q  114 ctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||||||| |||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  29059893 ctgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggatacccg 29059960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 31492097 - 31492258
Alignment:
Q  21 gatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccg 119  Q
    |||||||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||| ||| || ||||||||||||||||||| |||||||||||    
T  31492097 gatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccg 31492196  T
Q  120 cctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    || |||| | || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31492197 cccatttaggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 31492258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 21747189 - 21747028
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggtcatgggtcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgc 117  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | ||| |  ||| ||||||||||||||| ||||||| |    
T  21747189 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgggtcgaatccagctttaggcatgctgcagcgttaaaactcttagggagagcctac 21747090  T
Q  118 cgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacc 179  Q
    | || |||||| || |||||  |||||||||||||||| |||||||| ||||||||||||||    
T  21747089 cacccatttgggtcccacaatcctcgagggattagtcttcgcagttgtgcgcggaggatacc 21747028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 8839432 - 8839262
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    ||||||||||||| |||||||||||| || ||||||||||||| ||||| |||||||||| |||| ||| || ||| ||||||||||||||| |||  ||    
T  8839432 cttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagaatct 8839333  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcg--cgcggaggatacccgattt 185  Q
    ||||||||||| |||| |||||  ||||||||||||||||||||| |||||  |||||| ||||||||||||    
T  8839332 gccgcctatttagatcccacaatactcgagggattagtctccgcaattgcgcacgcgga-gatacccgattt 8839262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 19477399 - 19477249
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggtcatgggtc-gaatccagctttggacatacaacagtgttaaaactcttaggaagagcctg 116  Q
    ||||||||||||||||||||||||| || ||||||||||||  |||||  ||||||||| |||| ||| |||||||||||||||||||||| ||||| ||    
T  19477399 ttagatgagatggaacgggtctcttctagcttaaccaaggttctgggtttgaatccagccttgggcatgcaacagtgttaaaactcttagggagagcttg 19477300  T
Q  117 ccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcg 168  Q
    ||| | |||||| || ||||| ||| ||||||||||||||||||||||||||    
T  19477299 ccggccatttgggtcccacaatgct-gagggattagtctccgcagttgcgcg 19477249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 28537380 - 28537541
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||||||||||||||||| |||||||| ||||||  ||||| |||||||||| |||| ||| |||||  ||||||||||||||| |||||||    
T  28537380 cttagatgagatggaacgggtctcttctaacttaatcaaggttttgggttcgaatccagccttgggcatgcaacaacgttaaaactcttagggagagcct 28537479  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||||| |||||| |    | | ||| ||||||||||||||||||||||| |||| ||||||||||    
T  28537480 gccgcccatttgggt----ccatgcttgagggattagtctccgcagttgcacgcgaaggatacccg 28537541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 35707838 - 35708001
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggtcatgggtcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgc 117  Q
    |||||| |||| |||| |||||||| ||  |||||||||||  ||| ||||||||| |||||||||| |||||  ||||||| ||||||| ||| | |||    
T  35707838 ttagattagattgaacaggtctcttctagtttaaccaaggttctggttcgaatccaactttggacatgcaacaacgttaaaattcttagggagaacttgc 35707937  T
Q  118 cgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    | || |||| ||||  |||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  35707938 ctcccatttagatcctacaatgctcgagggattagtctctgcagttgcgcgtggaggatacccg 35708001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 46373663 - 46373834
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||||   |||||||||| || ||||| |||| || ||||| |||||||||  |||| |||||||||  |||||||||| |||| ||||| |    
T  46373663 cttagatgagatgacgcgggtctcttctagcttaagcaagatcctgggttcgaatccagtcttgggcatacaacatcgttaaaactcgtagggagagctt 46373762  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagtt--gcgcgcggaggatacccgattt 185  Q
    ||||||||||||| || ||||| ||||||| |||||||||  ||||||  ||||||||| ||||||||||||    
T  46373763 gccgcctatttgggtcacacaatgctcgagagattagtcttggcagtttcgcgcgcggaagatacccgattt 46373834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 13254252 - 13254117
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||||||||||||||||| || ||||||||||||| || || |||||||||| || | ||| || ||| ||| ||||||||||| |||||||    
T  13254252 cttagatgagatggaacgggtctcttctagcttaaccaaggtcctgagttcgaatccagccttaggcatgcagcagcgttgaaactcttagggagagcct 13254153  T
Q  116 gccgcctatttggatctcacaacgctcgagggatta 151  Q
    |||||| |||| | || ||||| |||||||||||||    
T  13254152 gccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 37339803 - 37339715
Alignment:
Q  97 aaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    ||||||||||  |||| ||||||||||||||| || || || ||||||||||||||||||||||||||||| |||||||||||||||||    
T  37339803 aaactcttagtgagagtctgccgcctatttgggtcccataatgctcgagggattagtctccgcagttgcgcacggaggatacccgattt 37339715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 11486843 - 11486730
Alignment:
Q  68 aatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgc 167  Q
    |||||||| |||| ||| || | ||||||||||||||| ||||||| ||||||| |||||| |  ||||| |||| || ||||||||||  |||||||||    
T  11486843 aatccagccttgggcatgcatctgtgttaaaactcttaagaagagcttgccgcccatttgggttccacaatgctcaagagattagtctctacagttgcgc 11486744  T
Q  168 gcggaggatacccg 181  Q
    ||||||||||||||    
T  11486743 gcggaggatacccg 11486730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 20207564 - 20207649
Alignment:
Q  93 gttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatac 178  Q
    ||||||||||||| | ||||| ||||||  |||||||||  |||| ||||||||||||||||||||||||||||| | ||||||||    
T  20207564 gttaaaactcttaaggagagcttgccgcgcatttggatcctacaatgctcgagggattagtctccgcagttgcgcacagaggatac 20207649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 42741886 - 42741791
Alignment:
Q  89 cagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    ||||||||||||| ||||| ||| |||||| || |||||| || || ||  |||||||||||| |||| ||||||||||||||||||||||||||||    
T  42741886 cagtgttaaaacttttagggagaacctgccacccatttgggtc-cataatactcgagggattaatctctgcagttgcgcgcggaggatacccgattt 42741791  T

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Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 40099423 - 40099312
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||||||||||||||||| || |||||| ||| || ||  | |||||||||||||||| || || |||  |||||||||||||| ||||| |    
T  40099423 cttagatgagatggaacgggtctcttctagcttaactaagatcctgaattcgaatccagctttggatatgcagcagcattaaaactcttagggagagctt 40099324  T
Q  116 gccgcctatttg 127  Q
    |||||| |||||    
T  40099323 gccgcccatttg 40099312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 28665183 - 28665244
Alignment:
Q  119 gcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggataccc 180  Q
    |||||||| | || ||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  28665183 gcctattttggtcccacaatgctcgagggattagtctccgcagttgcacgcggaggataccc 28665244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 24172246 - 24172364
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactct--taggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagt 162  Q
    ||||||||| | |||| ||| |||||  |||||||||||  |||  ||||| ||||||| | ||||||| ||||| |||||| ||||||||||  |||||    
T  24172246 tcgaatccaaccttgggcatgcaacaacgttaaaactctcttagtgagagcttgccgcccacttggatcccacaatgctcgaaggattagtctatgcagt 24172345  T
Q  163 tgcgcgcggaggatacccg 181  Q
    ||||||||||| |||||||    
T  24172346 tgcgcgcggagtatacccg 24172364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 14545006 - 14545070
Alignment:
Q  89 cagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagt 153  Q
    ||||||||||||||||||| ||||||||||| | |||||| || ||||| |||||| ||||||||    
T  14545006 cagtgttaaaactcttagggagagcctgccgtccatttgggtcccacaatgctcgatggattagt 14545070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 31776494 - 31776571
Alignment:
Q  102 cttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacc 179  Q
    |||||| |||||| || ||| |||||| || |||||  |||||||||||| ||| |||||||||| ||||||||||||    
T  31776494 cttagggagagccagctgcccatttgggtcccacaatactcgagggattaatcttcgcagttgcgggcggaggatacc 31776571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 36821113 - 36821069
Alignment:
Q  134 acaacgctcgagggattagtctccgcagttgcgcgcggaggatac 178  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||    
T  36821113 acaatgctcgagggattagtctctgcagttgcgcgcagaggatac 36821069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 5905803 - 5905850
Alignment:
Q  8 ccaaaaacacttagatgagatggaacgggtctcttataacttaaccaa 55  Q
    |||||||| |||||||||||| ||||| ||||||| ||||||||||||    
T  5905803 ccaaaaacgcttagatgagatagaacgagtctcttctaacttaaccaa 5905850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 181
Target Start/End: Original strand, 14552482 - 14552515
Alignment:
Q  148 attagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||||||||||||||||||||| |||||||||||    
T  14552482 attagtctccgcagttgcgcgcagaggatacccg 14552515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 29428857 - 29428792
Alignment:
Q  102 cttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgc 167  Q
    |||||| ||||  ||||| | ||||||||| ||||| | |||||||||||||||| ||||||||||    
T  29428857 cttagggagagtttgccgaccatttggatcccacaatgttcgagggattagtctctgcagttgcgc 29428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 45778968 - 45779017
Alignment:
Q  130 tctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacc 179  Q
    ||||||||  |||||||||||||||||||||||||||   ||||||||||    
T  45778968 tctcacaatactcgagggattagtctccgcagttgcgaatggaggatacc 45779017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 2657987 - 2657947
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaagg 57  Q
    |||||||||||||||||| ||||||| |||||||| |||||    
T  2657987 cttagatgagatggaacgagtctcttctaacttaatcaagg 2657947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 4125177 - 4125006
Alignment:
Q  15 cacttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagc 113  Q
    |||||||||||||||||||||||||||| || ||||||||| ||| ||||| |||||| ||| |||| ||| || || |||||||||||||||| |||||    
T  4125177 cacttagatgagatggaacgggtctcttctagcttaaccaatgtcctgggttcgaatcaagccttgggcatgcagcactgttaaaactcttagggagagc 4125078  T
Q  114 ctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    |||||||| |||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4125077 ctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 4125006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 2743924 - 2744088
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctg 116  Q
    ||||||||||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||| ||| || ||||||||||||||||||| ||||| ||    
T  2743924 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcatg 2744023  T
Q  117 ccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
     || | |||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2744024 tcgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 2744088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 12958236 - 12958077
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggtc-gaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||||||||  ||||||| || |||||||||||||||||||  ||||||||| |||| ||| || ||| ||||||||||||||| |||||||    
T  12958236 cttagatgagatggaactagtctcttctagcttaaccaaggtcatgggtttgaatccagcattgggcatgcagcagcgttaaaactcttagggagagcct 12958137  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggagga 175  Q
    | |||| |||||| || ||||| |||||||||||||||||||||||| ||||||||||||    
T  12958136 gtcgcccatttgggtcccacaatgctcgagggattagtctccgcagtagcgcgcggagga 12958077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 30935992 - 30936159
Alignment:
Q  15 cacttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagc 113  Q
    |||||||||||||||||||||||||||| |||||||||||||||| || || |||||||||| ||   ||| || ||  ||||||||||||||| |||||    
T  30935992 cacttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagccttaagcatgcagcaacgttaaaactcttagggagagc 30936091  T
Q  114 ctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||||||| |||||| ||  |||| | |||||||||||||||||||||||||||||||| | ||||||    
T  30936092 ctgccgcccatttgggtccgacaatgttcgagggattagtctccgcagttgcgcgcggatgttacccg 30936159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 13468895 - 13468731
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctg 116  Q
    |||||| |||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||| |||  | ||| ||||||||||||||  |||| |||    
T  13468895 ttagattagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgtagcagcgttaaaactcttagagagagtctg 13468796  T
Q  117 ccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    ||||| |||||  || ||||| |||||| |||||||||||||||||||||| |||||||||||||    
T  13468795 ccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttgcgcacggaggatacccg 13468731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 19715877 - 19715713
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||||||||  |||| || || ||||||||||||| ||||| |||||||||| |||| ||| || ||| ||||||||||| ||| ||||| |    
T  19715877 cttagatgagatggaacatgtcttttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagcgttaaaactctcagggagagctt 19715778  T
Q  116 gccgcctatttggatctcacaacgctcga-gggattagtctccgcagttgcgcgcggaggatacc 179  Q
    |||||| |||||| || ||||| |||||| ||||||||||||||||||||||||||||| |||||    
T  19715777 gccgcccatttgggtcccacaatgctcgaggggattagtctccgcagttgcgcgcggagaatacc 19715713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 7839326 - 7839239
Alignment:
Q  94 ttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||||||||||||| ||||| ||||||| |||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7839326 ttaaaactcttagggagagcatgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 7839239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 36994651 - 36994502
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    ||||||| |||||| ||  ||||||| ||  |||||||||||| ||||| |||||||||| |||||||| || ||| ||||||||||||| | ||||  |    
T  36994651 cttagataagatggcacatgtctcttctagtttaaccaaggtcctgggttcgaatccagccttggacatgcagcagcgttaaaactcttaaggagagttt 36994552  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgc 165  Q
    || ||| |||||| || ||||| |||||||||||||||||| ||||||||    
T  36994551 gctgcccatttgggtcccacaaggctcgagggattagtctctgcagttgc 36994502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 30056151 - 30055991
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctg 116  Q
    ||||||||||||||||  ||||||| || |||||| |||||||||||| | |||||||| || | ||| || |||  |||||||||||||| ||||||||    
T  30056151 ttagatgagatggaacatgtctcttctagcttaacgaaggtcatgggttcaaatccagccttaggcatgcagcagcattaaaactcttagggagagcctg 30056052  T
Q  117 ccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggata 177  Q
    ||| | |||||| |  ||||| ||||||||||||||||||   ||||||| |||| |||||    
T  30056051 ccgtccatttgggttccacaatgctcgagggattagtctctttagttgcgtgcgggggata 30055991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 15682928 - 15683059
Alignment:
Q  26 gatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctat 124  Q
    ||||||||| ||||||| || ||||| ||||||| || || |||||||||| |||| ||| || ||| ||||||||||||||| ||||||||||||| ||    
T  15682928 gatggaacgagtctcttctagcttaatcaaggtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagagcctgccgcccat 15683027  T
Q  125 ttggatctcacaacgctcgagggattagtctc 156  Q
    || | || ||||| ||||||||||||| ||||    
T  15683028 ttaggtcccacaatgctcgagggattaatctc 15683059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 39086859 - 39086905
Alignment:
Q  133 cacaacgctcgagggattagtctccgcagttgcgcgcggaggatacc 179  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  39086859 cacaatgctcgagggattagtctccgcagttgcacgcggaggatacc 39086905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 27121899 - 27121804
Alignment:
Q  19 tagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagc 113  Q
    ||||||||||   ||||||||||| || ||||||||| ||  ||||| |||||||||||||   ||| |||||||||||||||| |||||||||||    
T  27121899 tagatgagataacacgggtctcttctagcttaaccaaagttctgggttcgaatccagctttaagcatgcaacagtgttaaaacttttaggaagagc 27121804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 8521805 - 8521856
Alignment:
Q  133 cacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    ||||| ||||||||||||||| ||| |||||||||||||| ||||||||||||    
T  8521805 cacaatgctcgagggattagtatcc-cagttgcgcgcggaagatacccgattt 8521856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 39086808 - 39086850
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtc 59  Q
    |||||||||||||||||||| ||||| || |||||||||||||    
T  39086808 cttagatgagatggaacgggcctcttctagcttaaccaaggtc 39086850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 40320185 - 40320255
Alignment:
Q  115 tgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    ||||| ||||||||||| ||| | ||||||| |||||||||| | |||||  |||||||||||||| ||||    
T  40320185 tgccgtctatttggatcccacgatgctcgagagattagtctctgtagttgtacgcggaggatacccaattt 40320255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 35206990 - 35207079
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatggg-tcgaatccagctttggacatacaacagtgttaaaactctta 105  Q
    ||||||||||||| ||| |||||||| ||||||||||||| |  |||| ||||||  | | |||||||| || ||| |||||||||||||    
T  35206990 cttagatgagatgaaacaggtctcttctaacttaaccaagattctgggttcgaatttaaccttggacatgcagcagcgttaaaactctta 35207079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 10591915 - 10592086
Alignment:
Q  15 cacttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagc 113  Q
    |||||||||||||||||||||||||||| ||  |||||||||||| ||||| |||||||||| |||| ||| || ||||||||||||||||||| ||||     
T  10591915 cacttagatgagatggaacgggtctcttctagattaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagt 10592014  T
Q  114 ctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    |||||||| |||||  || ||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  10592015 ctgccgcccatttgagtcccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgattt 10592086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 22188147 - 22187984
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggtc-gaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||| |||||  |||||| |||||||||||||||  |||||  ||||||||| |||| |||||||||| |||||||||||| |  |||| ||    
T  22188147 cttagatgagattgaacgaatctcttctaacttaaccaaggtattgggtttgaatccagccttgggcatacaacagcgttaaaactcttgg--agagtct 22188050  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    ||||||||||||| || |||||  || |||||||||||||||||||||||||||||||||||||||    
T  22188049 gccgcctatttgggtcccacaatactagagggattagtctccgcagttgcgcgcggaggatacccg 22187984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 31113320 - 31113493
Alignment:
Q  13 aacacttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaaga 111  Q
    |||| |||||||||||| ||||||||| || || |||||  |||||  | ||| ||||| |||| |||| ||| || ||||||||||||||||||| |||    
T  31113320 aacatttagatgagatgaaacgggtcttttttagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggaga 31113419  T
Q  112 gcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    |||| ||||| ||||||||| |||||  ||||||||||||||||||||||||||||||| ||||||||||||||    
T  31113420 gcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcgaaggatacccgattt 31113493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 5123598 - 5123485
Alignment:
Q  67 gaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcg 166  Q
    |||| |||| |||| ||| || ||||||||||||||||||| ||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||||    
T  5123598 gaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcg 5123499  T
Q  167 cgcggaggataccc 180  Q
    ||||||||||||||    
T  5123498 cgcggaggataccc 5123485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 30785136 - 30784974
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctg 116  Q
    ||||||||||||||||| ||||||| || ||||| ||| ||| ||||| ||||||||||||||||||| || ||  ||||||||||||||| |||  |||    
T  30785136 ttagatgagatggaacgagtctcttctagcttaatcaatgtcttgggttcgaatccagctttggacatgcagcaacgttaaaactcttagggagaatctg 30785037  T
Q  117 ccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacc 179  Q
    ||  | |||| | |||||||| | || ||||||||||||||||||||||||||||||||||||    
T  30785036 ccatccatttaggtctcacaatgttcaagggattagtctccgcagttgcgcgcggaggatacc 30784974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 35774636 - 35774743
Alignment:
Q  77 ttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggat 176  Q
    |||||||| ||||| ||||||||| |||||| ||||| ||||||  |||||  ||||||||  ||||| | |||| ||||| ||||||| |||||| |||    
T  35774636 ttggacatgcaacaatgttaaaacacttagggagagcttgccgcacatttgagtctcacaatactcgatgaattaatctcctcagttgcacgcggaagat 35774735  T
Q  177 acccgatt 184  Q
    ||||||||    
T  35774736 acccgatt 35774743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 18909449 - 18909313
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||| |||||||| |||   | ||||| ||||||| | ||| |||||||||| ||||  || || ||||||||||||||||||| |||   |    
T  18909449 cttagatgagatagaacgggtttct---agcttaatcaaggtcctaggttcgaatccagccttgggtatgcagcagtgttaaaactcttagggagaattt 18909353  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtct 155  Q
    |||||  ||||| ||| ||||| |||||||||||||||||    
T  18909352 gccgctcatttgaatcccacaatgctcgagggattagtct 18909313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 28023594 - 28023494
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatg-ggtcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    ||||||||||||||||||| |||||| || ||||||||| ||| || | ||||||||||| || | |||| |  |||||||||||| ||||| |||||||    
T  28023594 cttagatgagatggaacggatctcttctagcttaaccaatgtcctgagttcgaatccagccttaggcatatagtagtgttaaaacttttagggagagcct 28023495  T
Q  116 g 116  Q
    |    
T  28023494 g 28023494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 36212962 - 36213033
Alignment:
Q  92 tgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagtt 163  Q
    |||||||||||||||| ||||  ||||||| |||| | || ||||| |||||||||||| ||||||||||||    
T  36212962 tgttaaaactcttagggagagtttgccgcccatttaggtcccacaatgctcgagggattggtctccgcagtt 36213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 373840 - 373746
Alignment:
Q  91 gtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    ||||||||| | |||||||||   ||||| |||||||| ||  |||| | || |||||||| ||||||||||||||| |||||||||||| ||||    
T  373840 gtgttaaaattgttaggaagattttgccgtctatttgggtcatacaatgttcaagggattaatctccgcagttgcgcacggaggatacccaattt 373746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 19329560 - 19329680
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    ||||||| || ||| ||||| | ||||||||||||||||||| |||||  ||||  | | |||| |||||||| | |||||||||||||||   ||||||    
T  19329560 tcgaatctagattttgacatgcgacagtgttaaaactcttagaaagagtttgccttcaaattgggtctcacaaggttcgagggattagtctaatcagttg 19329659  T
Q  165 cgcgcggaggatacccgattt 185  Q
      || |||||||||| |||||    
T  19329660 gacgtggaggatacctgattt 19329680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 25983742 - 25983820
Alignment:
Q  103 ttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    ||||| ||||| ||||||| |||||  || || || | ||||| ||||||||||||||||||| | |||||||||||||    
T  25983742 ttagggagagcttgccgcccatttgagtcccataatgttcgagtgattagtctccgcagttgcacacggaggatacccg 25983820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 12682750 - 12682787
Alignment:
Q  141 tcgagggattagtctccgcagttgcgcgcggaggatac 178  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  12682750 tcgaggaattagtcttcgcagttgcgcgcggaggatac 12682787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 22402027 - 22402108
Alignment:
Q  86 caacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgc 167  Q
    ||||| ||||||||||   |||||| |  ||||||||||||   || ||||| ||||||||||||| |||||||||||||||    
T  22402027 caacaatgttaaaacttgcaggaagggtttgccgcctatttaagtcacacaatgctcgagggattaatctccgcagttgcgc 22402108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 42745267 - 42745102
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| |||| ||| || || |||||||||||||||| |||| ||    
T  42745267 cttagatgagatggaacgggtctcttatagcttaaccaaggtcttgggttcgaatccagccttgggcatgcagcaatgttaaaactcttagggagagtct 42745168  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    || |||||||||| |  ||||| | |||||||||||||||| ||||||||||||||||||||||||    
T  42745167 gctgcctatttgggttccacaatggtcgagggattagtctcagcagttgcgcgcggaggatacccg 42745102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 5394387 - 5394555
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||||||||| ||||||| || ||||||||||||| ||||| |||||||||| |||| ||| || || |||||||||||||||| |||||||    
T  5394387 cttagatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagca-tgttaaaactcttagggagagcct 5394485  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    |||||| |||||| || ||||| ||||| ||||||||||||||||||||| |||||||||||| ||||||    
T  5394486 gccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgcacgcggaggatactcgattt 5394555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 31579382 - 31579215
Alignment:
Q  15 cacttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagc 113  Q
    ||||||||||||||| |||||||||||| || ||||| ||||||| ||||| |||||||||| |||| ||| |||||||||||||||| ||||| ||||     
T  31579382 cacttagatgagatgtaacgggtctcttctagcttaatcaaggtcttgggttcgaatccagccttgggcatgcaacagtgttaaaacttttagggagagt 31579283  T
Q  114 ctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||||||| ||||   || ||||| |||||||| |||||| |||||||||||||||||||||||||||    
T  31579282 ctgccgcccatttaagtcccacaatgctcgaggaattagtttccgcagttgcgcgcggaggatacccg 31579215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 18105513 - 18105353
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||| ||||||||||||| ||||||| || ||||||||||||| ||||| |||||||||| |||| ||| |||||  ||||||| ||||| | |||||||    
T  18105513 cttatatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcaacaacgttaaaattcttatggagagcct 18105414  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggata 177  Q
    |||||| |||||  ||||||||  |||||||||||||||| |||||||||||||||||||||    
T  18105413 gccgcccatttgagtctcacaatactcgagggattagtct-cgcagttgcgcgcggaggata 18105353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 44732726 - 44732619
Alignment:
Q  15 cacttagatgagatggaacgggtctcttataacttaaccaaggtcatggg-tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagc 113  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |||| ||| || ||||||||||||||||||| |||||    
T  44732726 cacttagatgagatggaacgggtctcttatagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagc 44732627  T
Q  114 ctgccgcc 121  Q
    ||||||||    
T  44732626 ctgccgcc 44732619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 9438286 - 9438126
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctg 116  Q
    |||||||||||||||||  |||||| || ||||||||| ||| | ||| |||||||||| |||| ||| || ||| ||||||||||||||||||| ||||    
T  9438286 ttagatgagatggaacgaatctcttttagcttaaccaaagtctttggttcgaatccagccttgggcatgcagcagggttaaaactcttaggaagaacctg 9438187  T
Q  117 ccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggata 177  Q
    ||||| |||||  || ||||| ||| ||||||||||| ||| |||||||||||||||||||    
T  9438186 ccgcccatttgtgtcccacaatgcttgagggattagtttccacagttgcgcgcggaggata 9438126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 17981488 - 17981652
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggtcgaa-tccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||||||||| ||||||| || ||||||||| ||| ||  |  || |||||  |||| ||| |||||   |||||||||||||| ||||| |    
T  17981488 cttagatgagatggaacgagtctcttctagcttaaccaaagtcctgaatttaaatccagtcttgggcatgcaacaacattaaaactcttagggagagctt 17981587  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||||  |||||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  17981588 gccgca-atttgggtcccacaatgctcgagagattagtctccgcagttgcgcgcggaggatacccg 17981652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 12133381 - 12133269
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatggg-tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||||||||| ||||||| || ||||| |||||||||||| ||||||||||| |||||||| || ||  ||||||||||||||| |||||||    
T  12133381 cttagatgagatggaacgagtctcttctagcttaatcaaggtcatgggttcgaatccagccttggacatgcagcaacgttaaaactcttagggagagcct 12133282  T
Q  116 gccgcctatttgg 128  Q
    |||| | ||||||    
T  12133281 gccgtccatttgg 12133269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 25423821 - 25423903
Alignment:
Q  103 ttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    ||||| ||| ||||||||| |||||| || ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||    
T  25423821 ttagggagaacctgccgcccatttgggtcccacaatgctcgagggattagtctcagcagttgcgcgtggaggatacccgattt 25423903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 37568880 - 37568787
Alignment:
Q  15 cacttagatgagatggaacgggtctcttataacttaaccaaggtcatggg-tcgaatccagctttggacatacaacagtgttaaaactcttagg 107  Q
    ||||||||||||||||||||||| |||| || ||||||||||||| |||| ||||||||||| || | ||| || |||||||||||||||||||    
T  37568880 cacttagatgagatggaacgggtttcttctagcttaaccaaggtcctgggttcgaatccagccttaggcatgcagcagtgttaaaactcttagg 37568787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 14551555 - 14551633
Alignment:
Q  107 gaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    |||||| ||||||||||||||| ||  |||| ||||||||||||| ||||||||||||||||| |||||||| ||||||    
T  14551555 gaagagtctgccgcctatttgggtcctacaatgctcgagggattaatctccgcagttgcgcgcagaggatactcgattt 14551633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 7157488 - 7157600
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||| ||| ||||| ||||||| ||||||||||||| || | ||| |||||| ||| |||| ||| || ||  ||||||||||||||| |||||||    
T  7157488 cttagatgggatagaacgagtctcttctaacttaaccaagatcctaggttcgaatctagccttgggcatgcagcaacgttaaaactcttagggagagcct 7157587  T
Q  116 gccgcctatttgg 128  Q
    |||||||||||||    
T  7157588 gccgcctatttgg 7157600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 33756958 - 33757102
Alignment:
Q  8 ccaaaaacacttagatgagatggaacgggtctcttataacttaaccaaggt-catgggtcgaatccagctttggacatacaacagtgttaaaactcttag 106  Q
    |||| |||||||||||||||||  ||||||||||| || ||||| |||||| | | | |||||| |||| |||  ||||||| || ||||||||||||||    
T  33756958 ccaagaacacttagatgagatgacacgggtctcttctagcttaatcaaggttcttagttcgaattcagccttgagcatacaatagcgttaaaactcttag 33757057  T
Q  107 gaagagcctgccgcctatttggatctcacaacgctcgagggatta 151  Q
    ||||||| || |||  ||||| ||| ||||| ||| |||||||||    
T  33757058 gaagagcttgtcgctcatttgaatcgcacaatgcttgagggatta 33757102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 37180098 - 37179983
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    ||||||||||  |||||||| |||||||||     |||||||| ||||  ||||||| |||||  || |||||  |||||||||||||||| |||| |||    
T  37180098 tcgaatccagtcttggacatgcaacagtgt-----ctcttagggagagtgtgccgcccatttgagtcccacaatactcgagggattagtctacgcacttg 37180004  T
Q  165 cgcgcggaggatacccgattt 185  Q
    |||||||||||||||||||||    
T  37180003 cgcgcggaggatacccgattt 37179983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 993744 - 993906
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatggg-tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||||  ||| |||||||||| ||||||||||||| |||| |||||| || | |||| ||| || ||| | ||||||||||||| ||| | |    
T  993744 cttagatgagatgacacgtgtctcttatagcttaaccaaggtcctgggttcgaattcaaccttgggcatgcagcagcg-taaaactcttagggagaactt 993842  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacc 179  Q
    |||||| |||||| ||  ||||  ||  | |||||||| ||||| |||||||| ||||||||||    
T  993843 gccgcccatttgggtcctacaatactgaatggattagtttccgccgttgcgcgtggaggatacc 993906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 38743805 - 38743879
Alignment:
Q  93 gttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgc 167  Q
    ||||||||| || || ||||| ||||||  ||||||||||||||| |||  ||||||||||||||||||||||||    
T  38743805 gttaaaacttttggggagagcttgccgctcatttggatctcacaatgctttagggattagtctccgcagttgcgc 38743879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 38373064 - 38372978
Alignment:
Q  95 taaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgat 183  Q
    ||||||||||||||||||| ||||||| ||  || || ||||| |||| ||| ||||||||   |||||||||||||||||||||||||    
T  38373064 taaaactcttaggaagagcttgccgcccat--gggtcccacaatgctcaaggaattagtctatacagttgcgcgcggaggatacccgat 38372978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 7020508 - 7020352
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctg 116  Q
    ||||||||||| | ||||||||||| || ||||||||||||| ||  | ||||| ||  || || ||| || || |||||||| ||||||| ||| | ||    
T  7020508 ttagatgagattgcacgggtctcttctagcttaaccaaggtcttgaattcgaattcaatttagg-catgcagcaatgttaaaa-tcttagggagaacttg 7020411  T
Q  117 ccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggagga 175  Q
    ||||| |||||| ||  |||| ||||||| ||||||||||  |||||||||||||||||    
T  7020410 ccgcccatttgggtcctacaatgctcgagtgattagtctcgacagttgcgcgcggagga 7020352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 28365939 - 28365981
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtc 59  Q
    |||||||||||||||||| ||||||| ||||||||||||||||    
T  28365939 cttagatgagatggaacgcgtctcttctaacttaaccaaggtc 28365981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 37092223 - 37092181
Alignment:
Q  139 gctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||||||||||||||||||||||||| || |||||||||||||    
T  37092223 gctcgagggattagtctccgcagttgtgcacggaggatacccg 37092181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 1682136 - 1682181
Alignment:
Q  140 ctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    |||||||||||||||||||||||||||| | |||||||||| ||||    
T  1682136 ctcgagggattagtctccgcagttgcgcacagaggatacccaattt 1682181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 17655758 - 17655822
Alignment:
Q  123 atttggatctcacaacgctcgagggattagtctccgcagttgc--gcgcggaggatacccgattt 185  Q
    ||||||||  ||||| |||||||||||||||||||||||||||  ||| |||||||||| |||||    
T  17655758 atttggattccacaaggctcgagggattagtctccgcagttgcgtgcgaggaggatacctgattt 17655822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 34386566 - 34386630
Alignment:
Q  109 agagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggag 173  Q
    ||||| ||||| |||||||||||||| || ||||||| ||||| |||| |||||| |||||||||    
T  34386566 agagcttgccgtctatttggatctcataatgctcgagagattaatctctgcagttacgcgcggag 34386630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 19252540 - 19252506
Alignment:
Q  123 atttggatctcacaacgctcgagggattagtctcc 157  Q
    ||||||||||||||| |||||||||||||||||||    
T  19252540 atttggatctcacaaggctcgagggattagtctcc 19252506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 185
Target Start/End: Complemental strand, 24413000 - 24412909
Alignment:
Q  93 gttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    ||||||||||| |||| |||| |||| ||||||||  || |||||  || |||| |||||||||||||||| |||  ||||||||||| ||||    
T  24413000 gttaaaactctaagga-gagcttgccacctatttgagtcccacaatacttgaggaattagtctccgcagttccgctaggaggatacccaattt 24412909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 40688813 - 40688761
Alignment:
Q  133 cacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    ||||||||||||| ||||||||| ||||||||||  ||||| ||| |||||||    
T  40688813 cacaacgctcgagagattagtcttcgcagttgcgaacggagaataaccgattt 40688761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 26332 - 26486
Alignment:
Q  28 tggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctattt 126  Q
    ||||||||||||||| || ||||||||||||| ||||| |||||||||| |||| ||| || ||||||||||||||||||| ||||||||||||| ||||    
T  26332 tggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccattt 26431  T
Q  127 ggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    || || ||||| | ||||| |||||||||||||||||||||||||||||||||||    
T  26432 gggtcccacaatgttcgagagattagtctccgcagttgcgcgcggaggatacccg 26486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 30996116 - 30995955
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||||||||||||||||| || ||||||||||||| ||||| |||||||  | |||| ||| |||||| ||||||||||||||| |||| ||    
T  30996116 cttagatgagatggaacgggtctcttctatcttaaccaaggtcctgggttcgaatccgaccttgggcatgcaacagcgttaaaactcttagggagagtct 30996017  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggata 177  Q
    |||||| || ||| || ||||| |||||||||||||||||||||||||||||||||||||||    
T  30996016 gccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 30995955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 27763713 - 27763872
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||| ||||||||||| ||   ||||||||||||| ||||| |||||||||| |||| |||||||||||||||||||||||||| |||| ||    
T  27763713 cttagatgagatagaacgggtctcctag--cttaaccaaggtcctgggttcgaatccagccttgggcatacaacagtgttaaaactcttagggagagtct 27763810  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggata 177  Q
    |||| | |||||  || ||||| ||||||||||||||||||||||||||||||| |||||||    
T  27763811 gccgtccatttgagtcccacaatgctcgagggattagtctccgcagttgcgcgcagaggata 27763872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 38331118 - 38331287
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggtc-gaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    ||||||||||||||| |||||||||| |||||||||||| ||| || ||  ||||||| |||||  ||| || ||| ||||||||||||||  ||||| |    
T  38331118 cttagatgagatggatcgggtctcttctaacttaaccaatgtcctgagtttgaatccaactttgagcatgcagcagcgttaaaactcttagagagagctt 38331217  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    |||||| |||||| || ||||| | | ||||||||||||||||||||||| |||||||||||||||||||    
T  38331218 gccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgcacgcggaggatacccgattt 38331287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 48204462 - 48204293
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||||||||| ||||||| || ||||||||||||| ||||| |||||||||| |||| ||| || ||  |||||||| |||||| ||||| |    
T  48204462 cttagatgagatggaacgagtctcttctagcttaaccaaggtcttgggttcgaatccagccttgggcatgcagcaacgttaaaacccttagggagagctt 48204363  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    | || | |||||| |  ||||| |||| |||||||||| |||||||||||||||||||||||||||||||    
T  48204362 gtcgtccatttgggttccacaatgctcaagggattagtttccgcagttgcgcgcggaggatacccgattt 48204293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 25224689 - 25224854
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    ||||||||||||| |||||||||||| || ||||||||||||| ||||| |||||| || |||||  || || ||| ||||||||||||| | ||| | |    
T  25224689 cttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatcaagttttgggaatgcagcagcgttaaaactcttaaggagaactt 25224788  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||||| |||| | || ||||| |||| |||||||||||||||||||||| |||||||||||||||    
T  25224789 gccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgcacgcggaggatacccg 25224854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 67 - 180
Target Start/End: Original strand, 20861289 - 20861402
Alignment:
Q  67 gaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcg 166  Q
    ||||||||| |||| ||| || ||| ||||||||||||||| ||||||||||||| |||||| |  || || |||||||||||||||||||||||||| |    
T  20861289 gaatccagcattgggcatgcagcagcgttaaaactcttagggagagcctgccgcccatttgggttccataatgctcgagggattagtctccgcagttgtg 20861388  T
Q  167 cgcggaggataccc 180  Q
    ||||||||||||||    
T  20861389 cgcggaggataccc 20861402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 55123136 - 55123256
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    ||||||||||| ||||| || || ||| ||||||| ||||||| ||||| |||  || |||||| |||||||| ||||||||||||||||| ||||||||    
T  55123136 tcgaatccagccttggaaatgcagcagcgttaaaattcttagggagagcttgctacccatttgggtctcacaatgctcgagggattagtcttcgcagttg 55123235  T
Q  165 cgcgcggaggatacccgattt 185  Q
    ||||||||||||||| |||||    
T  55123236 cgcgcggaggatacctgattt 55123256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 8757431 - 8757499
Alignment:
Q  113 cctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8757431 cctgccgcctatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 8757499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 40294603 - 40294771
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctg 116  Q
    ||||||||||||  ||| ||||| | || ||||| ||||||| || || |||||||||| ||||| || ||||| |||||||||||||||| | ||| ||    
T  40294603 ttagatgagatgacacgagtctcctctaccttaatcaaggtcctgagttcgaatccagccttggatatgcaacaatgttaaaactcttagggaaagcttg 40294702  T
Q  117 ccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    ||||  ||||| ||| |||||  ||||| |||||||||||||||||||||| |  ||||||||||||||    
T  40294703 ccgctcatttgaatcccacaatactcgaaggattagtctccgcagttgcgcacaaaggatacccgattt 40294771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 38088625 - 38088737
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggt-catgggtcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    ||||||||||||| |||||||||||| || |||||||||||| |  || |||||||||||||||| ||| ||  || ||||||||||||||| ||| | |    
T  38088625 cttagatgagatgaaacgggtctcttctagcttaaccaaggttccaggttcgaatccagctttgggcatgcagtagcgttaaaactcttagggagaactt 38088724  T
Q  116 gccgcctatttgg 128  Q
    |||||||||||||    
T  38088725 gccgcctatttgg 38088737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 1642645 - 1642765
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    ||||||| ||| ||| |||| || | ||||||||||| ||||| |||| || ||| | |||||| || |||||  || ||||||||||| ||||||||||    
T  1642645 tcgaatctagccttgaacatgcagccgtgttaaaacttttagggagagtctaccgtccatttgggtcccacaatacttgagggattagtttccgcagttg 1642744  T
Q  165 cgcgcggaggatacccgattt 185  Q
    ||||||||||||| |||||||    
T  1642745 cgcgcggaggatatccgattt 1642765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 48211099 - 48210943
Alignment:
Q  29 ggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttg 127  Q
    |||||||||||||| |||||||| ||||||  | ||| |||||||||| |||  ||| || ||  ||||||||||||| | ||||| ||||| ||||||     
T  48211099 ggaacgggtctcttctaacttaatcaaggtttttggttcgaatccagccttgagcatgcagcaacgttaaaactcttatggagagcttgccgtctattta 48211000  T
Q  128 gatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgatt 184  Q
    | || |||||  ||||||| |||  ||||||||||||| |||||| |||||||||||    
T  48210999 ggtcccacaatactcgaggaattgatctccgcagttgcacgcggaagatacccgatt 48210943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 181
Target Start/End: Original strand, 22288214 - 22288390
Alignment:
Q  6 atccaaaaacacttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactctt 104  Q
    |||||||| | |||||||||||||  | |  |||||| |||||||||||| ||| || || ||||| |||| ||| |||| ||||| |||||||||||||    
T  22288214 atccaaaagcgcttagatgagatgacatgaatctcttctaacttaaccaaagtcctgagttcgaattcagccttgaacatgcaacaatgttaaaactctt 22288313  T
Q  105 aggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    ||| ||| | || || | |||||  |  |||||  ||| ||| ||||||||| ||||||| ||||||||||||||||    
T  22288314 agggagaacttgtcgtccatttgagttacacaatactcaaggaattagtctctgcagttgtgcgcggaggatacccg 22288390  T

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Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 39950235 - 39950371
Alignment:
Q  50 aaccaaggtcatgggtc-gaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgaggga 148  Q
    |||||||||| |||||  |||||||| ||||||||| || ||| ||||||| | ||||| |||  ||| ||   |||||||||  |||| |||||| |||    
T  39950235 aaccaaggtcttgggttagaatccagttttggacatgcagcagcgttaaaatttttagggagaatctgtcgttcatttggatccgacaatgctcgaagga 39950334  T
Q  149 ttagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    |||||||||||||||||  ||||||||||||| ||||    
T  39950335 ttagtctccgcagttgcatgcggaggatacccaattt 39950371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 40318475 - 40318435
Alignment:
Q  141 tcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40318475 tcgagggattagtctccgcagttgcgcgcggaggatacccg 40318435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 46604711 - 46604670
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggt 58  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  46604711 cttagatgagatggaacgagtctcttataacttaaccaaggt 46604670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 43621386 - 43621294
Alignment:
Q  93 gttaaaactcttaggaagagcctgccgcctatttggatctcacaac-gctcgagggattagtctccgcagttgcgcgcggaggatacccgatt 184  Q
    ||||||||| ||||| ||||| |||| || ||||   ||||||||  |||||||||||||||||| | |||||||||| ||||||||||||||    
T  43621386 gttaaaacttttagggagagcttgcctcccatttaagtctcacaaatgctcgagggattagtctctgtagttgcgcgcagaggatacccgatt 43621294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 44941316 - 44941255
Alignment:
Q  115 tgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggata 177  Q
    ||||||| ||||||||| ||  | |||||||| ||||||||||||||||||||||||||||||    
T  44941316 tgccgcccatttggatcccattatgctcgagg-attagtctccgcagttgcgcgcggaggata 44941255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 42514594 - 42514698
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatggg-tcgaatccagctttggacatacaaca--gtgttaaaactcttaggaagagc 113  Q
    ||||||||||||| |||| ||||||| || |||||| || ||| |||| ||||||||| |||||| ||| || ||  | ||||||||||||||| |||||    
T  42514594 cttagatgagatgaaacgtgtctcttctagcttaactaaagtcttgggttcgaatccaactttgggcatgcatcagcgcgttaaaactcttagggagagc 42514693  T
Q  114 ctgcc 118  Q
     ||||    
T  42514694 ttgcc 42514698  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 185
Target Start/End: Original strand, 11767161 - 11767269
Alignment:
Q  77 ttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggat 176  Q
    |||| ||| ||||| | ||||||||||||| ||| || ||||||| |||||  || |||||   | || |||||||||| |||| || |||| |||||||    
T  11767161 ttgggcatgcaacaatattaaaactcttagcaagtgcttgccgcccatttgagtcccacaatatttgaaggattagtcttcgcaattacgcgtggaggat 11767260  T
Q  177 acccgattt 185  Q
    |||||||||    
T  11767261 acccgattt 11767269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 28967340 - 28967288
Alignment:
Q  10 aaaaacacttagatgagatggaacgggtctcttataacttaaccaaggtcatg 62  Q
    |||||| |||| ||||||||  ||| ||||||| |||||||||||||||||||    
T  28967340 aaaaacgcttacatgagatgacacgagtctcttctaacttaaccaaggtcatg 28967288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 31412111 - 31412281
Alignment:
Q  15 cacttagatgagatggaacgggtctcttataacttaaccaaggtcatgggtcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcc 114  Q
    ||||||||||||||||||||||||||| |||  ||||| |||||||||| |||||| ||||||||| | | || ||||||||||||||||||| |||| |    
T  31412111 cacttagatgagatggaacgggtctctcatagtttaactaaggtcatggatcgaattcagctttgggcgtgcagcagtgttaaaactcttagggagagtc 31412210  T
Q  115 tgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    ||||||| |||||| |  ||||| |||||||  |||||||||| ||||||||| ||||||||| |||||||    
T  31412211 tgccgcccatttgggttccacaatgctcgagaaattagtctccacagttgcgcacggaggatatccgattt 31412281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 12411138 - 12411303
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    ||||||||||||||||| |||||||| |||||||||||||||| || || |||||||||| |||| ||| || ||| |||||||||||||||||||| ||    
T  12411138 cttagatgagatggaacaggtctcttctaacttaaccaaggtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactcttaggaagagtct 12411237  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||||| ||||   || ||||| ||| ||||||||||||||| ||||||||||||| |||||||||    
T  12411238 gccgcccatttaagtcccacaatgcttgagggattagtctccacagttgcgcgcgggggatacccg 12411303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 65 - 181
Target Start/End: Complemental strand, 12836999 - 12836883
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    ||||||||||| || | ||| || ||| ||||||||||||||| |||||  |||||| |||||| || ||||| ||| ||||||||||||||| ||||||    
T  12836999 tcgaatccagccttaggcatgcagcagcgttaaaactcttagggagagctcgccgcccatttgggtcccacaatgcttgagggattagtctccccagttg 12836900  T
Q  165 cgcgcggaggatacccg 181  Q
    |||||||||||||||||    
T  12836899 cgcgcggaggatacccg 12836883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 21910196 - 21910357
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctg 116  Q
    |||||||||||| |||  ||||||| || |||||||||| || ||||| |||||||||| |||| ||| |||||  ||||||||||||||  |||| |||    
T  21910196 ttagatgagatgaaacaagtctcttctagcttaaccaagatcctgggttcgaatccagccttgggcatgcaacatcgttaaaactcttagagagagtctg 21910295  T
Q  117 ccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacc 179  Q
    ||||  |||| | || |||||  ||| |||||||||||||||||||||| |||||||||||||    
T  21910296 ccgctcatttaggtcccacaatactc-agggattagtctccgcagttgcacgcggaggatacc 21910357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 31412314 - 31412370
Alignment:
Q  204 tgttaacaaaggacacgtttatagtagaggttattgtttcttttttaaactaaggtat 261  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31412314 tgttaacaaaggacacgtttatagtagaggttattg-ttcttttttaaactaaggtat 31412370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 35 - 180
Target Start/End: Original strand, 28099251 - 28099397
Alignment:
Q  35 ggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctc 133  Q
    |||||||| || |||||| |||||| ||||| |||||||||| |||| ||| || ||||||||||||| ||||| |||   || || | |||||  |  |    
T  28099251 ggtctcttctaccttaactaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaacttttagggagaatttgtcgtccatttgagttcc 28099350  T
Q  134 acaacgctcgagggattagtctccgcagttgcgcgcggaggataccc 180  Q
    | || |||||||||||||||||||||||||||| |||||||||||||    
T  28099351 ataatgctcgagggattagtctccgcagttgcgagcggaggataccc 28099397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 31107643 - 31107481
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctg 116  Q
    |||||||||||| || ||||||||| ||||||||| |||||  || || |||||||||| |||||||| |||||| |||||||||||| || ||||| |     
T  31107643 ttagatgagatgaaatgggtctcttctaacttaactaaggttctgagttcgaatccagcattggacatgcaacagcgttaaaactctttgggagagctta 31107544  T
Q  117 ccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacc 179  Q
    ||| | |||||  || |||||   ||||| |||||||||| | | |||||||| |||||||||    
T  31107543 ccgtccatttgattcccacaatattcgagagattagtctctgtaattgcgcgcagaggatacc 31107481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 15614724 - 15614560
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatggg-tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||| ||||||||||||| ||||||| |||||||||||| |||||||| |||||| |||  ||||||||  | ||  ||||||||| || |||||| | |    
T  15614724 cttatatgagatggaacgagtctcttctaacttaaccaatgtcatgggttcgaattcagtcttggacatgtagcaacgttaaaacttttcggaagaactt 15614625  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggataccc 180  Q
     || ||||||||  || ||||| |||| ||| |||||||| | |||||||| | |||||||||||    
T  15614624 accacctatttgagtcccacaatgctctaggaattagtcttcacagttgcgtgtggaggataccc 15614560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 21029129 - 21028982
Alignment:
Q  22 atgagatggaacgggtctcttataacttaaccaaggtcatggg-tcgaatccagctttgg------acatacaacagtgttaaaactcttaggaagagcc 114  Q
    ||||||||| ||||||||||| || ||||||||||||| |||| ||||||||||| ||||      | || || ||| ||||||||||||||  ||||      
T  21029129 atgagatggcacgggtctcttctagcttaaccaaggtcttgggttcgaatccagccttgggcatgcagatgcagcagcgttaaaactcttag--agagtt 21029032  T
Q  115 tgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    ||||||| |||||| |  ||||| |||| |||||||||||||||||||||    
T  21029031 tgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 9536844 - 9536918
Alignment:
Q  103 ttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggata 177  Q
    ||||| ||||||| ||| | |||| |||  ||||| ||||||||||||||||||||||||||||| |||||||||    
T  9536844 ttagggagagcctaccgtccatttagattccacaatgctcgagggattagtctccgcagttgcgctcggaggata 9536918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 17177233 - 17177290
Alignment:
Q  121 ctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatac 178  Q
    |||||||||||||||||  |||||||||||| |||||| | ||| |||||||||||||    
T  17177233 ctatttggatctcacaatactcgagggattaatctccgtaattgtgcgcggaggatac 17177290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 278383 - 278550
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggtcatgggtc-gaatccagctttggacatacaacagtgttaaaactcttaggaagagcctg 116  Q
    ||||||||||||  ||| ||||||| || |||||| |||||| || ||  |||||||||||||| ||| |||||   |||||||||||| | ||||  ||    
T  278383 ttagatgagatgacacgagtctcttctagcttaactaaggtcttgagtttgaatccagctttgggcatgcaacaca-ttaaaactcttatggagagtttg 278481  T
Q  117 ccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    ||| | |||| | || |||||  ||| |||||||||||  | ||||||| | |||||||||||||||||    
T  278482 ccgtccatttaggtcccacaaaactcaagggattagtcgtcacagttgcacacggaggatacccgattt 278550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 1534320 - 1534409
Alignment:
Q  94 ttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    |||||||||||||| ||||| || |||| |||||  || ||||| |||||||| |||  |||||||||||  |||||||||||| |||||||    
T  1534320 ttaaaactcttagggagagcttgtcgcccatttgagtcgcacaatgctcgaggaattgatctccgcagtt--gcgcggaggatatccgattt 1534409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 6062110 - 6062182
Alignment:
Q  94 ttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcg 166  Q
    |||||||||||||||||||| |||||   |||||| ||  |||||| |||| |||||||||| ||||||||||    
T  6062110 ttaaaactcttaggaagagcttgccgttcatttgggtcctacaacgttcgatggattagtcttcgcagttgcg 6062182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 31868679 - 31868637
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttagg 107  Q
    ||||||||| | |||||||||||||| ||||||||||||||||    
T  31868679 tcgaatccaaccttggacatacaacaatgttaaaactcttagg 31868637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 423645 - 423782
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatggg-tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    ||||||||||||||||| | |||||| ||  |||||||||||  |||| | ||||||||| |||| ||| |  ||| ||||||||||||||  | |  ||    
T  423645 cttagatgagatggaacagatctcttctagtttaaccaaggttttgggtttgaatccagccttgggcatgctgcagcgttaaaactcttagagataaact 423744  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagt 153  Q
    |||| | |||||  || ||||| |||||||||||||||    
T  423745 gccgtccatttgagtcccacaatgctcgagggattagt 423782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 5944847 - 5944947
Alignment:
Q  32 acgggtctcttataacttaaccaaggtcatg-ggtcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggat 130  Q
    ||||||||||| |||||||||||||||| || | |||||| |||  || |||||  |||| |||||||||| ||||| ||||  ||||||| |||| |||    
T  5944847 acgggtctcttttaacttaaccaaggtcctgagttcgaattcagtctttgacatgtaacattgttaaaacttttagggagagtttgccgcccatttagat 5944946  T
Q  131 c 131  Q
    |    
T  5944947 c 5944947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 21028914 - 21028845
Alignment:
Q  93 gttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    ||||||||||||||  ||||  ||||||| |||||| |  ||||| |||| |||||||||||||||||||||    
T  21028914 gttaaaactcttag--agagtttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 16756072 - 16756241
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggtc-gaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    ||||||||||||||||||| |||||| || ||||||||||||  |||||  |||| |||| |||| ||| ||  || ||||||||||||||| ||||| |    
T  16756072 cttagatgagatggaacggatctcttctagcttaaccaaggttctgggtttgaattcagcattgggcatgcagaagcgttaaaactcttagggagagcat 16756171  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    | ||   |||||| || ||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  16756172 gtcgtgcatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatactcgattt 16756241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 28724663 - 28724827
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||||||||| ||||||| || |||||  ||| || ||| | ||||| |||| ||| |||| ||||||||||||||||||||||||||| ||    
T  28724663 cttagatgagatggaacgagtctcttctagcttaataaag-tcctggattcgaattcagccttgaacatgcaacagtgttaaaactcttaggaagagtct 28724761  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccg 181  Q
    |||| | |||||  ||  |||| | |||||||||||||||||||| ||||||||||||||||||||    
T  28724762 gccgtccatttgagtcctacaatgttcgagggattagtctccgcaattgcgcgcggaggatacccg 28724827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 42297516 - 42297430
Alignment:
Q  93 gttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacc 179  Q
    ||||||||||||||| |||| |||||| | |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42297516 gttaaaactcttagggagagtctgccgtccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 42297430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 22022111 - 22022274
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctg 116  Q
    |||||||||||||||| |||||||| || |||||| |||||  ||||| |||||||||| |||| ||| || |||  |||||||||||||| ||| | ||    
T  22022111 ttagatgagatggaacaggtctcttctagcttaactaaggttgtgggttcgaatccagccttgggcatgcagcagcattaaaactcttagggagaacttg 22022210  T
Q  117 ccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggataccc 180  Q
    || || |||||| || |||||   ||||||||||||||||||||||||| || |||||||||||    
T  22022211 ccacccatttgggtcccacaatattcgagggattagtctccgcagttgcacgtggaggataccc 22022274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 15642526 - 15642614
Alignment:
Q  97 aaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    ||||||||||| ||||  ||||||| |||||| || ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||    
T  15642526 aaactcttagggagagtttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgcgcgcggaggatacccgattt 15642614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 18428243 - 18428124
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    ||||||||| | |||| ||| || ||||||||||||| ||||| |||| |||| | | ||||||  | ||||| |||||||||||||||||| |||||||    
T  18428243 tcgaatccaaccttgggcatgcagcagtgttaaaacttttagggagagtctgctgtccatttggccc-cacaatgctcgagggattagtctctgcagttg 18428145  T
Q  165 cgcgcggaggatacccgattt 185  Q
    |||||||||||||||||||||    
T  18428144 cgcgcggaggatacccgattt 18428124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 36806650 - 36806766
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    |||||| |||| |||| ||||||  || ||||||||||||||| || | |||||||| |||||| |  ||||| |||||||||||||||||| |||||||    
T  36806650 tcgaattcagccttgggcatacagtagcgttaaaactcttagggagtgtctgccgcccatttgggttccacaatgctcgagggattagtctctgcagttg 36806749  T
Q  165 cgcgcggaggatacccg 181  Q
    | |||||||||||||||    
T  36806750 cacgcggaggatacccg 36806766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 9781091 - 9780976
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    ||||||||||| |||| ||| || ||| ||||||||||||||| |||| | |||||| |||||| || ||||| ||||||||||||||| |||| |||||    
T  9781091 tcgaatccagccttgggcatgcagcagcgttaaaactcttagggagagtcggccgcccatttgggtcccacaatgctcgagggattagtatccgtagttg 9780992  T
Q  165 cgcgcggaggataccc 180  Q
     |||||||| ||||||    
T  9780991 ggcgcggagaataccc 9780976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 12035546 - 12035709
Alignment:
Q  24 gagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaa-ctcttaggaagagcctgccgcc 121  Q
    ||||||||| ||||||||| ||  |||||||| ||| | ||| |||||||||| || | ||| ||||| |||||||| |||||||| |||| ||||||||    
T  12035546 gagatggaaagggtctcttctagtttaaccaaagtctttggttcgaatccagcctttggcatgcaacattgttaaaaactcttagggagagtctgccgcc 12035645  T
Q  122 tatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
     |||||| || ||||| |||||||||||||||||| ||| |||| || ||| ||||| ||||||    
T  12035646 catttgggtcccacaatgctcgagggattagtctcagcaattgcacgtggatgatactcgattt 12035709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 7242909 - 7242795
Alignment:
Q  65 tcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttg 164  Q
    ||||||||||  |||||||| || ||  ||||||||||||||| |||| || || || ||||| |||||| ||  |||||||||||||||||||||||||    
T  7242909 tcgaatccagtcttggacatgcagcaacgttaaaactcttagggagagtctacctcccatttgaatctcataatactcgagggattagtctccgcagttg 7242810  T
Q  165 cgcgcggaggatacc 179  Q
    |||||||| ||||||    
T  7242809 cgcgcggaagatacc 7242795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 45806226 - 45806388
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatg-ggtcgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    |||||||||||| ||||||||||||| || ||||||||||||| || | |||||| |||  |||| ||| || |||| |||||||||||||| ||||| |    
T  45806226 cttagatgagatagaacgggtctcttctatcttaaccaaggtcctgagttcgaattcagtcttgggcatgcagcagttttaaaactcttagggagagcat 45806325  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatac 178  Q
     ||||||||||   ||||||||   ||||  |||||||||| |||||| |||| |||||||||    
T  45806326 accgcctatttaagtctcacaatattcgaatgattagtctctgcagttacgcgtggaggatac 45806388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 10750588 - 10750756
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcct 115  Q
    ||||||||||||| |||  |||| || ||| |||||||||||| ||||| |||||| |   |||| |||||| ||| |||||||||||||||  | || |    
T  10750588 cttagatgagatgaaacatgtcttttctaatttaaccaaggtcttgggttcgaatctaatcttgggcatacatcagcgttaaaactcttaggt-gcgctt 10750686  T
Q  116 gccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    |||||| ||||||||| ||||| | |||||||||||||||   ||||||||||| ||||||||| |||||    
T  10750687 gccgcccatttggatcgcacaatgttcgagggattagtctttacagttgcgcgcagaggatacctgattt 10750756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 39547442 - 39547355
Alignment:
Q  89 cagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggat 176  Q
    |||||| ||||||||||||  ||| ||||||||||||| | |||||||| | |||| |||||| ||||||||||||||||| ||||||    
T  39547442 cagtgtcaaaactcttagggggagtctgccgcctatttaggtctcacaatgttcgacggattaatctccgcagttgcgcgcagaggat 39547355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 46864133 - 46864250
Alignment:
Q  68 aatccagctttggacatacaacagtgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgc 167  Q
    ||||||||||||| ||| ||  || ||||||| ||||||| ||| | ||||| | |||||| | |||||| | |||||||||||||||| ||||||||||    
T  46864133 aatccagctttgggcatgcagtagcgttaaaattcttagggagaacttgccgtccatttgggtttcacaatgttcgagggattagtctctgcagttgcgc 46864232  T
Q  168 gcggaggatacccgattt 185  Q
    ||  |||||||| |||||    
T  46864233 gcaaaggatacctgattt 46864250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 29124727 - 29124825
Alignment:
Q  9 caaaaacacttagatgagatggaacgggtctcttataacttaaccaaggtcatg-ggtcgaatccagctttggacatacaacagtgttaaaactcttag 106  Q
    |||||||  |||||||||||| |||| ||||||| || |||||||| ||||||| | ||||||||||| |||| ||| || ||| ||||||||||||||    
T  29124727 caaaaacgtttagatgagatgaaacgagtctcttctagcttaaccagggtcatgagttcgaatccagcattgggcatgcagcagcgttaaaactcttag 29124825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 32534074 - 32534235
Alignment:
Q  18 ttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttaggaagagcctg 116  Q
    |||||||| |||  |||||| |||| || ||||||||||||  ||| | | ||| ||||||||  ||| |||||  ||||||||||||||  ||||| |     
T  32534074 ttagatgatatgacacgggtttcttctagcttaaccaaggttttggattcaaattcagctttgagcatgcaacaacgttaaaactcttagagagagctta 32534173  T
Q  117 ccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacc 179  Q
    ||||| ||| || |||||||| ||||||| | |||||||||||| |||||||| |||||||||    
T  32534174 ccgcccattagg-tctcacaatgctcgagaggttagtctccgcaattgcgcgcagaggatacc 32534235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 44913180 - 44913262
Alignment:
Q  97 aaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacc 179  Q
    ||||||||||| ||||| ||||||| || ||| || ||||| ||||||| |||||||||| |||||| ||||| |||||||||    
T  44913180 aaactcttagggagagcttgccgcccatctgggtcccacaatgctcgagagattagtctctgcagttacgcgcagaggatacc 44913262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 6607854 - 6607691
Alignment:
Q  8 ccaaaaacacttagatgagatggaacgggtctcttataacttaaccaaggtcatgggt-cgaatccagctttggacatacaacagtgttaaaactcttag 106  Q
    |||| ||| |||||||| ||||  ||| ||||||| |||||||| || |||| || || |||||| | ||||||||||||||||    ||||||||||||    
T  6607854 ccaagaacgcttagatgggatgacacgagtctcttctaacttaatcatggtcttgagttcgaatctaactttggacatacaacataaataaaactcttag 6607755  T
Q  107 gaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcg 170  Q
     |||| | ||  |   |||| | |||||||| ||||||||||||||||||||||| ||| ||||    
T  6607754 aaagaacttgatgttcatttaggtctcacaatgctcgagggattagtctccgcagctgcacgcg 6607691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 14500409 - 14500358
Alignment:
Q  17 cttagatgagatggaacgggtctcttataacttaaccaaggtcatgggtcga 68  Q
    |||||||| ||||||||||||||||| || ||||||||||||| ||||||||    
T  14500409 cttagatgcgatggaacgggtctcttctagcttaaccaaggtcctgggtcga 14500358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 49071674 - 49071736
Alignment:
Q  123 atttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    |||||| || ||||| ||||||| |||||||||||||||||||| ||||| |||| |||||||    
T  49071674 atttgggtcccacaatgctcgagagattagtctccgcagttgcgtgcggaagatatccgattt 49071736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 10367575 - 10367663
Alignment:
Q  97 aaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    ||||||||| | |||| || ||||| |||||| ||  |||| |||||| |||||| |||||||||||||| ||| || |||||||||||    
T  10367575 aaactcttaaggagagtctaccgcccatttgggtccaacaatgctcgaaggattaatctccgcagttgcgtgcgaagaatacccgattt 10367663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 32883622 - 32883561
Alignment:
Q  92 tgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagt 153  Q
    |||||||||||||||| ||||  ||||||| ||||||| | |||||  ||||||||||||||    
T  32883622 tgttaaaactcttagggagagtttgccgcccatttggaccccacaagactcgagggattagt 32883561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 36086923 - 36087000
Alignment:
Q  92 tgttaaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgc 169  Q
    |||||||||||||| ||| ||  ||||| |||||| | |||||| | ||| |||||||||||||||| || |||||||    
T  36086923 tgttaaaactcttatgaaaagtttgccgtctatttaggtctcacgatgctggagggattagtctccgtagctgcgcgc 36087000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 789805 - 789872
Alignment:
Q  117 ccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    |||||||||| | ||||| || |||||||| ||||||||| |||||||| ||||||| |||| ||||||    
T  789805 ccgcctatttaggtctcataaagctcgagg-attagtctcggcagttgcacgcggagaatactcgattt 789872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 27296 - 27212
Alignment:
Q  96 aaaactcttaggaagagcctgccgcctatttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggataccc 180  Q
    |||||||||||| ||||| ||||||| ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||    
T  27296 aaaactcttagggagagcttgccgcccatttggatctcacgatgctcgagggattagtcttcgcagttgcgcgcggaggataccc 27212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 29196 - 29134
Alignment:
Q  123 atttggatctcacaacgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 185  Q
    |||||| || ||||| ||||| ||||||||||||| |||||||||||||||||||||||||||    
T  29196 atttgggtcccacaatgctcgtgggattagtctccacagttgcgcgcggaggatacccgattt 29134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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