View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6638_low_20 (Length: 243)

Name: NF6638_low_20
Description: NF6638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6638_low_20
NF6638_low_20
[»] chr2 (3 HSPs)
chr2 (82-174)||(33371825-33371917)
chr2 (13-90)||(33373254-33373331)
chr2 (173-225)||(33371703-33371755)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 33371917 - 33371825
Alignment:
Q  82 ttaaacataagcaagcggtctcgtaattattattaaatttgttctaaaaagtttaattaacatagagtagaagcacaaagaaactgaaaaatg 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33371917 ttaaacataagcaagcggtctcgtaattattattaaatttgttctaaaaagtttaattaacatagagtagaagcacaaagaaactgaaaaatg 33371825  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 33373331 - 33373254
Alignment:
Q  13 aatattaagttaccccgacgattttcaaactctaaagaataataaaatatttatccaaaaattacatttttaaacata 90  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33373331 aatattaagttacccctacgattttcaaactctaaagaataataaaatatttatccaaaaattacatttttaaacata 33373254  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 33371755 - 33371703
Alignment:
Q  173 tggtaacctctgcaatatagcatcagtgatatgcaacatcttcctctaattgt 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33371755 tggtaacctctgcaatatagcatcagtgatatgcaacatcttcctctaattgt 33371703  T

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