View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6638_low_3 (Length: 595)
Name: NF6638_low_3
Description: NF6638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6638_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 70 - 588
Target Start/End: Original strand, 10193912 - 10194430
Alignment:
| Q |
70 |
agtcttaattgacaaattaattttgtccattgagacagcaataaccatggcaaagggtaatgagggaaaaattaagacaaacaatgtcaacatgatggat |
169 |
Q |
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| T |
10193912 |
agtcttaattgacaaattaattttgtccattgagacagcaataaccatggcaaagggtaatgagggaaaaattaagacaaacaatgtcaacatgatggat |
10194011 |
T |
|
| Q |
170 |
tctcattgttcaaatggaagccctaaaagtgaggtccaagactcaaagttcaagcacaaacatgtgtctaagaaaaggtatattggattaaattacaaaa |
269 |
Q |
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| T |
10194012 |
tctcattgttcaaatggaagccctaaaagtgaggtccaagactcaaagttcaagcacaaacatgtgtctaagaaaaggtatattggattaaattacaaaa |
10194111 |
T |
|
| Q |
270 |
ttattgtttccttttgaacttagtggtgaatttccaaggttcacgatctcataattttcattattctttggaattttgtggtgcagaaaaaccgtgccta |
369 |
Q |
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| T |
10194112 |
ttattgtttccttttgaacttagtggtgaattttcaaggttcactatctcataattttcattattctttggaattttgtggtgcagaaaaaccgtgccta |
10194211 |
T |
|
| Q |
370 |
agtggacagagcaagtgaaggtttattctggaacagcagctgaagggtctgtggaggatggtcatagctggagaaagtatggacaaaaggatattcttgg |
469 |
Q |
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| T |
10194212 |
agtggacagagcaagtgaaggtttattctggaacagcagctgaagggtctgtggaggatggtcatagctggagaaagtatggacaaaaggatattcttgg |
10194311 |
T |
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| Q |
470 |
agctaagtttccaaggtaacaatcattttttacatcatctatgtttaatttgtgcaaacatatgcttaatgcttctttaaattcatagtaaatttttgtt |
569 |
Q |
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| T |
10194312 |
agctaagtttccaaggtaacaatcattttttacatcatctatgtttaatttgtgcaaacatatgcttaatgcttctttaaattcatagtaaatttttgtt |
10194411 |
T |
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| Q |
570 |
gcttattaaagtattatct |
588 |
Q |
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| T |
10194412 |
gcttattaaagtattatct |
10194430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 409 - 486
Target Start/End: Complemental strand, 48411788 - 48411711
Alignment:
| Q |
409 |
ctgaagggtctgtggaggatggtcatagctggagaaagtatggacaaaaggatattcttggagctaagtttccaaggt |
486 |
Q |
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||||||||||| |||| |||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| |
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| T |
48411788 |
ctgaagggtctttggatgatgaatatagctggagaaaatatggtcaaaaggatattcttggagctaagttttcaaggt |
48411711 |
T |
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