View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6638_low_5 (Length: 522)
Name: NF6638_low_5
Description: NF6638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6638_low_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 161 - 522
Target Start/End: Complemental strand, 41348628 - 41348268
Alignment:
| Q |
161 |
agtacaacacagataagctaaccgatagtataaaaaataagtgcaataaaacagaattttattggcttctaatttctttcattagagctgattttacctg |
260 |
Q |
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| T |
41348628 |
agtacaacacagatatgctaaccgatagtataaaaaataagtgcaataaaacagaattttattggcttctaatttctttcattagagctgattttacctg |
41348529 |
T |
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| Q |
261 |
tatacttattctataggtacacgaagatttcatctgtttannnnnnnnnnnnnaggcataagttagcacgtccnnnnnnnnnttacttgattttaacaac |
360 |
Q |
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| T |
41348528 |
tatacttattctataggtacacgaagatttcatctgtttatttttgtttttttaggcataaggtagcacgtccaaaaaaaa-ttacttgattttaacaac |
41348430 |
T |
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| Q |
361 |
taaaaatagatgatgaattaagaaagagttgactgttttctctttatatatgagttatctctgtgttgctgctgcagctgtcgggttgtcgaacgtatat |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
41348429 |
taaaaatagatgatgaattaagaaagagttgactgttttctctttatatatgagttatctctgtgttgctgctgcagctgtcggtttgtcgaacgtagat |
41348330 |
T |
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| Q |
461 |
cctcctcctccaaaatcaaaagtgagagtttggggtttttactatttgtaacatgagctaat |
522 |
Q |
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||||| || |||||||||||||||||||||||| ||| |||||||||||||||| |||||| |
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| T |
41348329 |
actccttcttcaaaatcaaaagtgagagtttgggttttgtactatttgtaacatgtgctaat |
41348268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 41348785 - 41348686
Alignment:
| Q |
5 |
gtgatatgaatacttggcatcggagcatgttccatttctgtcatgtttgccactctttgctgacacactcttatctactgcacttttcatctcctctcaa |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41348785 |
gtgatatgaatacttggcatcggagcatgttccatttctgtcatgtttgccactctttgctgacacactcttatctactgcacttttcatctcctctcaa |
41348686 |
T |
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