View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6638_low_6 (Length: 508)
Name: NF6638_low_6
Description: NF6638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6638_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 9 - 489
Target Start/End: Complemental strand, 37594590 - 37594110
Alignment:
| Q |
9 |
gacatcatcacataagcaccagaattataaggatccagattcaaaatgctcccagcagccagttcccccaatttcacgtttgaatgaatattacagccaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37594590 |
gacatcatcacataagcaccagaattataaggatccagattcaaaatgctcctagcagccagttcccccaatttcacgtttgaatgaatattacagccaa |
37594491 |
T |
|
| Q |
109 |
caagaaaagcaccccagatgctggcatctgcctcaaatggcatctcttggattactttgcaagctctctgcagttgacctgctcgactcataacatcaac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
37594490 |
caagaaaagcaccccagatgctggcatctgcctcaaatggcatctcttggattactttgcaagctctcagcaattgacctgctcgactcataacatcaac |
37594391 |
T |
|
| Q |
209 |
aacacaagaatagtgttcagaccttggcagaataccatatttatggaccatcaggtcaaaaagattcactgtctcatcaaccttcccagcacgacaacag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37594390 |
aacacaagaatagtgttcagaccttggcagaataccatatttatggaccatcaggtcaaaaagattcactgtctcatcaaccttcccagcacgacaacag |
37594291 |
T |
|
| Q |
309 |
gcagatagcaaattcaggaaagtaatgccatcaggtgtaacaccggctgttaccatatggtcaaagtagtagcgggctctgtcatatagaccatgctgtg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37594290 |
gcagatagcaaattcaggaaagtaatgccatcaggtgtaacaccggctgttaccatatggtcaaagtagtagcgggctctgtcatatagaccatgctgtg |
37594191 |
T |
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| Q |
409 |
caaatgcagcaatgattgtattccatgaaacaatgtccggatgagagatttgatcgaaggctaactcagagatgacaattt |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37594190 |
caaatgcagcaatgattgtattccatgaaacaatgtccggatgagagatttgatcgaaggctaactcagagatgacaattt |
37594110 |
T |
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