View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6638_low_7 (Length: 476)

Name: NF6638_low_7
Description: NF6638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6638_low_7
NF6638_low_7
[»] chr5 (12 HSPs)
chr5 (17-296)||(5116057-5116348)
chr5 (304-460)||(5116406-5116562)
chr5 (188-272)||(27821967-27822051)
chr5 (188-272)||(2494012-2494096)
chr5 (188-272)||(5628682-5628766)
chr5 (188-272)||(20875813-20875897)
chr5 (188-272)||(25058142-25058226)
chr5 (188-272)||(42826326-42826410)
chr5 (188-272)||(5898305-5898389)
chr5 (188-272)||(41555734-41555818)
chr5 (190-284)||(28471176-28471270)
chr5 (123-172)||(41335428-41335477)
[»] chr7 (5 HSPs)
chr7 (188-272)||(27254422-27254506)
chr7 (188-272)||(40756172-40756256)
chr7 (188-272)||(27265845-27265929)
chr7 (188-272)||(26405162-26405246)
chr7 (188-272)||(28348432-28348516)
[»] chr4 (6 HSPs)
chr4 (188-272)||(25596727-25596811)
chr4 (188-272)||(41294747-41294831)
chr4 (188-272)||(43631693-43631777)
chr4 (188-272)||(35306307-35306391)
chr4 (210-272)||(20214685-20214747)
chr4 (196-245)||(45069001-45069050)
[»] chr2 (6 HSPs)
chr2 (188-272)||(31669185-31669269)
chr2 (188-272)||(8549740-8549824)
chr2 (188-272)||(4200327-4200411)
chr2 (189-245)||(34663382-34663438)
chr2 (188-255)||(7087177-7087244)
chr2 (188-246)||(8291833-8291891)
[»] chr8 (2 HSPs)
chr8 (188-272)||(7827921-7828005)
chr8 (188-272)||(40846967-40847051)
[»] chr3 (6 HSPs)
chr3 (188-272)||(21183880-21183964)
chr3 (188-272)||(30894814-30894898)
chr3 (188-272)||(49005560-49005644)
chr3 (188-272)||(51774691-51774775)
chr3 (188-269)||(53142110-53142191)
chr3 (189-245)||(1547193-1547249)
[»] chr1 (6 HSPs)
chr1 (188-272)||(14517442-14517526)
chr1 (188-272)||(48349897-48349981)
chr1 (188-272)||(49913803-49913887)
chr1 (188-271)||(27053517-27053600)
chr1 (188-269)||(9773010-9773091)
chr1 (64-158)||(9773133-9773227)
[»] chr6 (3 HSPs)
chr6 (190-272)||(32639133-32639215)
chr6 (188-272)||(7689968-7690052)
chr6 (188-272)||(32636314-32636398)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 5116057 - 5116348
Alignment:
Q  17 tggtaggctcttgtgatccattcactaaacattgcatggacgtgcttaaggaagaagtgggtaaatccaacattcatcaagtcgatcagtttgaccgaga 116  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5116057 tggtaggctcttgtgatccattcactaaacattgcatgcacgcgcttaaggaagaagtgggtaaatccaacattcatcaagtcgatcagtttgaccgaga 5116156  T
Q  117 ggggtttactttctctgtctgtgaaacaatcaactatagagacaaaaggtcaatgaaaactttta------------aggcatggtggtgtgattgtggg 204  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||            |||||||||||||||||||||||    
T  5116157 ggggtttactttctctgtctctgaaacaatcaactatagagacaaaaggccaatgagaacttttaaggtagacctacaggcatggtggtgtgattgtggg 5116256  T
Q  205 gaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgactatagagtccttatcccataggtgtt 296  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5116257 aaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgactatagagtccttatcccataggtgtt 5116348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 304 - 460
Target Start/End: Original strand, 5116406 - 5116562
Alignment:
Q  304 gagttattgaccccatatgaaggtccaagcttttgccaatccagccttgcgatgactgaaaaaagatcaacccaacattactcgcattcaaaatgaaatg 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5116406 gagttattgaccccatatgaaggtccaagcttttgccaatccagccttgcgatgactgaaaaaagatcaacccaacattactcgcattcaaaatgaaatg 5116505  T
Q  404 gacgttgtggaaaggaaacgagaaaatatgacttgtgtcggaagaccagtcataatg 460  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5116506 gacgtcgtggaaaggaaacgagaaaatatgacctgtgtcggaagaccagtcataatg 5116562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 27821967 - 27822051
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| |||||||| | ||||||||||||||    
T  27821967 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtattcttcatttcaccatgacta 27822051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 2494096 - 2494012
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| | |||||||| |||||||||||| ||| |||| | |||| |||||||||    
T  2494096 ggtggtgtgattgtgggaaatttcaagctttacatttaccttgttcccatgtcatagccgcgtgttcttcatttcgccatgacta 2494012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 5628682 - 5628766
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  5628682 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 5628766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 20875897 - 20875813
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  20875897 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 20875813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 25058226 - 25058142
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  25058226 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 25058142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 42826410 - 42826326
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  42826410 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 42826326  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 5898305 - 5898389
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| | || ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  5898305 ggtggtgtgattgtgggaaatttcaagctttacattttccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 5898389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 41555818 - 41555734
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||  ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  41555818 ggtggtgtgattgtggaaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 41555734  T

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Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 190 - 284
Target Start/End: Complemental strand, 28471270 - 28471176
Alignment:
Q  190 tggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgactatagagtccttat 284  Q
    ||||||||||||||  ||| ||||| ||||||| |||||||||| |||||||||| | ||| |||| | ||||||||||| |||| | |||||||    
T  28471270 tggtgtgattgtggaaaatatcaagctttacatttgccttgttcccatgtcatagtcgcgtgttcttcatttcaccatgattatacaatccttat 28471176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 41335477 - 41335428
Alignment:
Q  123 tactttctctgtctgtgaaacaatcaactatagagacaaaaggtcaatga 172  Q
    ||||||||||||||||||||||||||| ||||| ||   |||||||||||    
T  41335477 tactttctctgtctgtgaaacaatcaaatatagggagggaaggtcaatga 41335428  T

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Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 27254422 - 27254506
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||| ||| |||| | |||| |||||||||    
T  27254422 ggtggtgtgattgtgggaaatttcaagctttacatttgccttgttcccatgtcatagccgcgtgttcttcatttcgccatgacta 27254506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 40756172 - 40756256
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  40756172 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 40756256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 27265845 - 27265929
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||| ||| ||||||| |||||||||| |||||||||||| ||| |||| | |||  |||||||||    
T  27265845 ggtggtgtgattgtgggaaattttaagctttacatttgccttgttcccatgtcatagccgcgtgttcttcattttgccatgacta 27265929  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 26405162 - 26405246
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| | || ||||| ||||| |||||| ||| |||| | |||| |||||||||    
T  26405162 ggtggtgtgattgtgggaaatttcaagctttacattttccatgttctcatgttatagccgcgtgttcttcatttcgccatgacta 26405246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 28348432 - 28348516
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||| | ||||||||| ||||||| |||| ||||| ||||||||| || ||| |||| | |||| |||||||||    
T  28348432 ggtggtgtgattgtgcgaaatttcaagctttacatttgccatgttctcatgtcataaccgcgtgttcttcatttcgccatgacta 28348516  T

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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 25596727 - 25596811
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||||| |||| ||||||||||| |||| | |||| |||||||||    
T  25596727 ggtggtgtgattgtgggaaatttcaagctttacatttgccttgttcccatggcatagccacgtgttcttcatttcgccatgacta 25596811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 41294831 - 41294747
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||  ||||||||| ||||||| |||||||||| |||||||||||| ||| |||| | |||| |||||||||    
T  41294831 ggtggtgtgattgtggaaaatttcaagctttacatttgccttgttcccatgtcatagccgcgtgttcttcatttcgccatgacta 41294747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 43631777 - 43631693
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| |||||||||||||| || |||||||||| ||||||||||||  || |||| | |||| |||||||||    
T  43631777 ggtggtgtgattgtgggaaatttcaagttttagatttgccttgttcccatgtcatagccgtgtgttcttcatttcgccatgacta 43631693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 35306391 - 35306307
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    |||| |||||||||||| ||||||||| ||||||| |||||||||  |||||||||||| ||| |||| | |||| |||||||||    
T  35306391 ggtgatgtgattgtgggaaatttcaagctttacatctgccttgtttccatgtcatagccgcgtgttcttcgtttcgccatgacta 35306307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 20214747 - 20214685
Alignment:
Q  210 tcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||| || |||| |||||||||| |||||||||||| ||| |||| | ||||||||||||||    
T  20214747 tcaagcttcacatttgccttgttcccatgtcatagccgcgtgttcttcatttcaccatgacta 20214685  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 45069050 - 45069001
Alignment:
Q  196 gattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||  ||||||||| ||||||| ||||||||||||||||| ||||    
T  45069050 gattgtggaaaatttcaagctttacatgtgccttgttcacatgtcttagc 45069001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 31669185 - 31669269
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||| ||| |||| | |||| |||||||||    
T  31669185 ggtggtgtgattgtgggaaatttcaagctttacatttgccttgttcccatgtcatagccgcgtgttcttcatttcgccatgacta 31669269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 8549740 - 8549824
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||| | ||| |||||||||||| ||| |||| | |||| |||||||||    
T  8549740 ggtggtgtgattgtgggaaatttcaagctttacatttgccatattctcatgtcatagccgcgtgttcttcatttcgccatgacta 8549824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 4200327 - 4200411
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| | |||||||||| | | |||| | |||| |||||||||    
T  4200327 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcttgtcatagccgcatgttcttcatttcgccatgacta 4200411  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 34663382 - 34663438
Alignment:
Q  189 gtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    |||||||||||||||| ||||||| | ||| |||||||||||||||||||| |||||    
T  34663382 gtggtgtgattgtgggaaatttcaggctttccatatgccttgttcacatgttatagc 34663438  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 7087244 - 7087177
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattct 255  Q
    ||||||||||||||||| | ||||||| ||||||| |||| ||||| ||||||||| |||||| ||||    
T  7087244 ggtggtgtgattgtgggaagtttcaagctttacatttgccatgttcccatgtcataaccacgtgttct 7087177  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 8291833 - 8291891
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagcc 246  Q
    ||||||||||||||| | ||||||||| ||||||| |||| ||||| ||||||||||||    
T  8291833 ggtggtgtgattgtgagaaatttcaagctttacatttgccatgttcccatgtcatagcc 8291891  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 7828005 - 7827921
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  7828005 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 7827921  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 40846967 - 40847051
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||  || |||| | |||| |||||||||    
T  40846967 ggtggtgtgattgtgggaaatttcaagctttacatttgccttgttcccatgtcatagccgtgtgttcttcatttcgccatgacta 40847051  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 21183880 - 21183964
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  21183880 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 21183964  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 30894814 - 30894898
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  30894814 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 30894898  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 49005560 - 49005644
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  49005560 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 49005644  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 51774775 - 51774691
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  51774775 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 51774691  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 53142110 - 53142191
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatga 269  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| ||||||    
T  53142110 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatga 53142191  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 1547193 - 1547249
Alignment:
Q  189 gtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    |||||||||||||||| |||||||   ||| |||| |||||||||||||||||||||    
T  1547193 gtggtgtgattgtgggaaatttcagactttccataagccttgttcacatgtcatagc 1547249  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 14517442 - 14517526
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  14517442 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 14517526  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 48349897 - 48349981
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||| ||| |||| | |||| |||||||||    
T  48349897 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagccgcgtgttcttcatttcgccatgacta 48349981  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 49913803 - 49913887
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||||  ||||||||| ||||||| |||||||||| |||||||||||| ||| |||| | ||||  ||||||||    
T  49913803 ggtggtgtgattgtggaaaatttcaagctttacatttgccttgttcccatgtcatagccgcgtgttcttcatttcgtcatgacta 49913887  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 27053517 - 27053600
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgact 271  Q
    ||||||||||||||| | ||| ||||| ||||||| || ||||||| |||||||||||| ||| |||| | |||||||||||||    
T  27053517 ggtggtgtgattgtgcgaaatatcaagctttacatttgtcttgttcccatgtcatagccgcgtgttcttcatttcaccatgact 27053600  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 269
Target Start/End: Complemental strand, 9773091 - 9773010
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatga 269  Q
    ||||||||||||||||   |||||||| |||||||| || || || ||||||||||| | ||| ||||| ||||||||||||    
T  9773091 ggtggtgtgattgtggtagatttcaagctttacatacgcgttattgacatgtcatagtcgcgtgttctagctttcaccatga 9773010  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 9773227 - 9773133
Alignment:
Q  64 aaggaagaagtgggtaaatccaacattcatcaagtcgatcagtttgaccgagaggggtttactttctctgtctgtgaaacaatcaactatagaga 158  Q
    |||||||| |||||||| ||||||| ||| ||||| || || || || |||||| | |||||||| |||  ||||||||||| ||||||| ||||    
T  9773227 aaggaagacgtgggtaagtccaacactcaccaagttgaacaattcgatcgagagagatttactttttcttcctgtgaaacaaccaactatggaga 9773133  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 32639133 - 32639215
Alignment:
Q  190 tggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||| ||||||||| ||| ||||| ||||||| |||||||||| ||| |||||||| ||| |||| | ||||||||||||||    
T  32639133 tggtgcgattgtgggaaatatcaagctttacatctgccttgttcccatttcatagccgcgtgttctccatttcaccatgacta 32639215  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 7689968 - 7690052
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    ||||||||||||||| | ||||||||| ||||||| |||| ||||| |||||||||||| ||| || | | |||| |||||||||    
T  7689968 ggtggtgtgattgtgagaaatttcaagctttacatttgccatgttctcatgtcatagcctcgtgttgttcatttcgccatgacta 7690052  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 32636398 - 32636314
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagccacgtattctacctttcaccatgacta 272  Q
    |||||||||||||||   ||| ||||| ||||||| |||||||||| || ||||||| | ||| |||| | ||||||||||||||    
T  32636398 ggtggtgtgattgtgcaaaatatcaagctttacatttgccttgttcccaagtcatagtcgcgtgttcttcatttcaccatgacta 32636314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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