View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6638_low_8 (Length: 441)
Name: NF6638_low_8
Description: NF6638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6638_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 79 - 425
Target Start/End: Original strand, 42003377 - 42003723
Alignment:
| Q |
79 |
tttcattgaaaagagtattttttgcacaaatttcaaaataaattattatatacgttttcttaactagtgttttaagaacatttgttagcattannnnnnn |
178 |
Q |
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| T |
42003377 |
tttcattgaaaagagtattttgtgcacaaatttcaaaataaattattatatacgttttcttaactagtgttttaagaacatttgttagcattattttttt |
42003476 |
T |
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| Q |
179 |
ncaagagtaaaaaatagacaagattgttttggcataaactagataaattgttatggtctctactaatatagtggggcacccttcactcccagtagatagt |
278 |
Q |
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| T |
42003477 |
tcaagagtaaaaaaaagacaagattgttttggcataaactagataaattgttatggtctctactaatatagtggggcacccttcactcccagtagatagt |
42003576 |
T |
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| Q |
279 |
aacactatcatcctacccttgaaaatgaaaacatgtttttgggtcattaaattagctgtctctctcgaagacaagtttcaatttcaagacctgcaaggct |
378 |
Q |
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| T |
42003577 |
aacactatcatcctacccttgaaaatgaaaacatgtttttgggtcattaaattagctgtctctctcgaagacaagtttcaatttcaagacctgcaaggct |
42003676 |
T |
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| Q |
379 |
ggagaacactcttaacgttcatgaatctgtcaagatcacatgatttt |
425 |
Q |
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| T |
42003677 |
ggagaacactcttaacgttcatgaatctgtcaagatcacatgatttt |
42003723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 405
Target Start/End: Original strand, 42012292 - 42012450
Alignment:
| Q |
247 |
tagtggggcacccttcactcccagtagatagtaacactatcatcctacccttgaaaatgaaaacatgtttttgggtcattaaattagctgtctctct-cg |
345 |
Q |
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| T |
42012292 |
tagtggggtaccctttactcccaatagatagtaacactctcatgcttccctggaaaacaagagcaagttcttgggtcgctcaattagctgtctatctgct |
42012391 |
T |
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| Q |
346 |
aagacaagtttcaatttcaagacctgcaaggctggagaacactc-ttaacgttcatgaatc |
405 |
Q |
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| T |
42012392 |
aagacaattttcaatttcatgatctgcaaggctg--gaacactctttaacattcatgaatc |
42012450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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