View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6638_low_9 (Length: 394)
Name: NF6638_low_9
Description: NF6638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6638_low_9 |
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| [»] scaffold0520 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 24 - 278
Target Start/End: Complemental strand, 22822810 - 22822556
Alignment:
| Q |
24 |
tggatatgttttgtgcttgctacatgttataagtttcatggggagctaaaatcaacttaatcaatatgtgctattttgacatcatcaaaaggggggagat |
123 |
Q |
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| T |
22822810 |
tggatatgttttgtgcttgctacatgttataagtttcacggggagctaaaatcaacttaatcaacatgtgttcttttgacatcatcaaaaagggggagat |
22822711 |
T |
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| Q |
124 |
tgaagcatctggctaatttttgatgttgttagcttttagcttatagattaattgtgttgtgcattatatgttgatcaacccaaacaaatatatatataaa |
223 |
Q |
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| T |
22822710 |
tgaagcctctaactagtttttgatgttgttagcttttagcttatagattaattgtgttgtgcattatatcttgatcagcccaaacaaatatatatataaa |
22822611 |
T |
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| Q |
224 |
attttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatct |
278 |
Q |
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| T |
22822610 |
attttgaaattgttttactaagattttgcaacttgtttacaatatgagtaaatct |
22822556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 344 - 391
Target Start/End: Complemental strand, 22822500 - 22822453
Alignment:
| Q |
344 |
cgtcatcaccctcattttcgtttctcgatgtctccttcttctcactcg |
391 |
Q |
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| T |
22822500 |
cgtcatcaccctcattttcgtttctcgatgtctccttgttctctctcg |
22822453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 22851484 - 22851537
Alignment:
| Q |
226 |
tttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatctc |
279 |
Q |
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| T |
22851484 |
tttgaaattgttttaccaaggttttgcaacttgtttacaatatgagtaaatctc |
22851537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 23479373 - 23479320
Alignment:
| Q |
226 |
tttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatctc |
279 |
Q |
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| T |
23479373 |
tttgaaattgttttaccaaggttttgcaacttgtttacaatatgagtaaatctc |
23479320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 22853608 - 22853661
Alignment:
| Q |
226 |
tttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatctc |
279 |
Q |
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| T |
22853608 |
tttgaaattgttttaccaaggttttgcaacttatttacaatatgagtaaatctc |
22853661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0520 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0520
Description:
Target: scaffold0520; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 6002 - 6092
Alignment:
| Q |
84 |
tcaatatgtgctattttgacatcatcaaaaggggggagattgaagcatctggcta-atttttgatgttgttagcttttagcttatagatta |
173 |
Q |
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| T |
6002 |
tcaacatgtgctcttttgacatcatcaaaaagagggagattgaagcctccagctatagttttgatgatgttagcttttagattctagatta |
6092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 8364943 - 8364996
Alignment:
| Q |
226 |
tttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatctc |
279 |
Q |
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| T |
8364943 |
tttgaaattgttttaccaaggttttgcaacttgtttacaatatgagtaaatctc |
8364996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 20468357 - 20468410
Alignment:
| Q |
226 |
tttgaaattgttttcttaatattttgcaacttgtttacaatatgagtaaatctc |
279 |
Q |
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| T |
20468357 |
tttgaaattgttttaccaaggttttgcaacttgtttataatatgagtaaatctc |
20468410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 279
Target Start/End: Complemental strand, 19766122 - 19766093
Alignment:
| Q |
250 |
tgcaacttgtttacaatatgagtaaatctc |
279 |
Q |
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| T |
19766122 |
tgcaacttgtttacaatatgagtaaatctc |
19766093 |
T |
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