View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6640_high_3 (Length: 359)
Name: NF6640_high_3
Description: NF6640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6640_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 39612794 - 39612964
Alignment:
| Q |
10 |
attattctgagtaatggctagagaatttcatgctatacttggtggtggccaaggagattataattcaggaattttatatttattgggaattatctttctg |
109 |
Q |
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| T |
39612794 |
attattctgagtaatggctagagaatttcatgctatacttggtggtggccagggagattataattcaggaattttatatttattgggaattatctttctg |
39612893 |
T |
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| Q |
110 |
tctctttcagttttatccatcatcatattttcttgtggtgatgacaaccatcacaagcatcgaaaaagaag |
180 |
Q |
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| T |
39612894 |
tctctttcagttttatccatcatcatattttcttgtggtgatgacaaccatcacaagcatcgaaaaagaag |
39612964 |
T |
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Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 39613058 - 39613126
Alignment:
| Q |
274 |
ctagatcaattatcttttgtacacaaatatacattggtatgaacatgtataaatgaaaattaaattagt |
342 |
Q |
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| T |
39613058 |
ctagatcaattatcttttgtacacaaatatacattggtatgaacatgtataaatgaaaattaaattagt |
39613126 |
T |
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