View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6640_high_7 (Length: 201)
Name: NF6640_high_7
Description: NF6640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6640_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 6e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 11982043 - 11982194
Alignment:
| Q |
1 |
cagatctttaaacattttcatcactttctttcaacattattgacataatcaccaagaaaattcacatgcaagtgaacccttagattaaacacacgttgtt |
100 |
Q |
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| T |
11982043 |
cagatctttaaacattttcatcactttctttcaacattattgacataatcaccaagaaaatccacatgcaagtgaacccttagattaaacacacgttgtt |
11982142 |
T |
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| Q |
101 |
ttaggggttaaagaaaaatttgtagcagaacattgggagcaacttaagagag |
152 |
Q |
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| T |
11982143 |
ttaggggtcaaagaaaaatttgtagcagaacattgggagcaacttaagagag |
11982194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 11982201 - 11982243
Alignment:
| Q |
138 |
agcaacttaagagagccaattcagaaggaacaacccctgaact |
180 |
Q |
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| T |
11982201 |
agcaacttaagagagccaattcagaaggaacaacccctgaact |
11982243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 31909433 - 31909342
Alignment:
| Q |
13 |
cattttcatcactttctttcaacattattgacataatcaccaagaaaattcacatgcaagtgaacccttagattaaacacacgttgttttaggg |
106 |
Q |
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| T |
31909433 |
cattttcatcattttctttcaacattattcatgtaatcaccaagaaaatccacatgcaagtgaaccgttatattaaacaca--ttgttttaggg |
31909342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 25005975 - 25006007
Alignment:
| Q |
143 |
cttaagagagccaattcagaaggaacaacccct |
175 |
Q |
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| T |
25005975 |
cttaagagagccaattcagaaggaacaacccct |
25006007 |
T |
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