View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6640_low_1 (Length: 591)
Name: NF6640_low_1
Description: NF6640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6640_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 11 - 576
Target Start/End: Original strand, 34436887 - 34437452
Alignment:
| Q |
11 |
agaaaatttagagtacacagacgaggacactaaaataaaatacgtcactgatggatcttacatacaaacaggagttaacaaaaacatttcttcagactat |
110 |
Q |
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| T |
34436887 |
agaaaattttgagtacacagacgaggacactaaaataaaatacgtcactgatggatcttacatacaaacaggagttaacaaaaacatttcttctgactat |
34436986 |
T |
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| Q |
111 |
gcatacccaaaaaatcctaatctaccatatccactctcagatctcagaagttttcctcatggaaaccggaactgttaccgattatttgccggaacaaaag |
210 |
Q |
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| T |
34436987 |
gcatacccaaaaaatcctaatctaccatatccactctcagatctcagaagttttcctcatggaaaccggaactgttaccgattaattgccggaacaaaag |
34437086 |
T |
|
| Q |
211 |
gcagtttacatttaataagagcttctttcttgtatggaaactatgacggcgaaaacaaactgcctgaatttgatctctatgttggtgtaaatttctggtc |
310 |
Q |
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| T |
34437087 |
gcagtttacatttaataagagcttctttcttgtatggaaactatgacggcgaaaacaaactgcctgaatttgatctctatgttggtgtaaatttctggtc |
34437186 |
T |
|
| Q |
311 |
atcagtgaaatttaagaatgcttcagaacaagttgcattggaaataatcagcatggcaacatcagaagaaacaaatgtgtgccttgtgaataaaggaaaa |
410 |
Q |
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| T |
34437187 |
atcagtgaaatttaagaatgcttcagaacaagttgcattggaaacaatcagcatggcaacatcagaagaaacaaatgtgtgccttgtgaataaaggaaaa |
34437286 |
T |
|
| Q |
411 |
ggaattccttttatctcagcattggaacttagaccaattgataactctatttataaaactgagtttggtgattctgcttcattgttacttttcaaaagat |
510 |
Q |
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| T |
34437287 |
ggaattccttttatctcagcattggaacttagaccaattgataactctatttataaaactgagtttggtgattctgcttcattgttacttttcaaaagat |
34437386 |
T |
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| Q |
511 |
gggacattggttcatttaatggaagtggtagatatcaagatgatgtttatgatagaatttggtttc |
576 |
Q |
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| T |
34437387 |
gggacattggttcatttaatggaagtggtagatatcaagatgatgtttatgatagaatttggtttc |
34437452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 14 - 576
Target Start/End: Original strand, 34443637 - 34444199
Alignment:
| Q |
14 |
aaatttagagtacacagacgaggacactaaaataaaatacgtcactgatggatcttacatacaaacaggagttaacaaaaacatttcttcagactatgca |
113 |
Q |
| |
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|||||| ||||||||||| || | ||| |||||||||||| ||| |||||| ||||||||||||||||| |||||| |||||||||| | |||||||| |
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| T |
34443637 |
aaattttgagtacacagatgatgtaactgaaataaaatacggcacagatggagcttacatacaaacaggacttaacagaaacatttctgctaactatgca |
34443736 |
T |
|
| Q |
114 |
tacccaaaaaatcctaatctaccatatccactctcagatctcagaagttttcctcatggaaaccggaactgttaccgattatttgccggaacaaaaggca |
213 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||| |||| |
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| T |
34443737 |
tacccaaaaaatcctaatctaccatatacattctcagatctcagaagttttcctcaaggaaaccgaaactgttaccgattaattgccggaagaaatggca |
34443836 |
T |
|
| Q |
214 |
gtttacatttaataagagcttctttcttgtatggaaactatgacggcgaaaacaaactgcctgaatttgatctctatgttggtgtaaatttctggtcatc |
313 |
Q |
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| T |
34443837 |
gtttacatttaataagagcttctttcttgtatggaaactatgacggcgaaaacaaactgcctgaatttgatctctatgttggtgtaaatttatggtcaac |
34443936 |
T |
|
| Q |
314 |
agtgaaatttaagaatgcttcagaacaagttgcattggaaataatcagcatggcaacatcagaagaaacaaatgtgtgccttgtgaataaaggaaaagga |
413 |
Q |
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||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34443937 |
agttaaatttaagaatgcttcagaaggagttacattggaaataatcagcatggcaacatcagaagaaacaaatgtttgccttgtgaataaaggaaaagga |
34444036 |
T |
|
| Q |
414 |
attccttttatctcagcattggaacttagaccaattgataactctatttataaaactgagtttggtgattctgcttcattgttacttttcaaaagatggg |
513 |
Q |
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|||||||||||||| || ||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34444037 |
attccttttatctccgcgttggaacttagaccagttgatagttctatttataaaactgagttcggtgattctgcttcattgttacttttcaaaagatggg |
34444136 |
T |
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| Q |
514 |
acattggttcatttaatggaagtggtagatatcaagatgatgtttatgatagaatttggtttc |
576 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
34444137 |
acattggttcatttaatggaagtggtagatatcaagacgatgtttacgatagaatttggtttc |
34444199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 21440383 - 21440347
Alignment:
| Q |
220 |
atttaataagagcttctttcttgtatggaaactatga |
256 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
21440383 |
atttaataagagcttctttctattatggaaactatga |
21440347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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