View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6640_low_2 (Length: 432)
Name: NF6640_low_2
Description: NF6640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6640_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 245 - 422
Target Start/End: Complemental strand, 46690168 - 46689991
Alignment:
| Q |
245 |
gagatgaaacacatgaataatcgataccaattttatatgttttaaaacgatgaagggtttaatcaaaaacgaaattcagttttatactaaatatgcagat |
344 |
Q |
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| T |
46690168 |
gagatgaaacacatgaataatcgataccaattttatatgttttaaaacgatgaagggtttaatcaaaaacgaaattcagttttatactgaatatgcagat |
46690069 |
T |
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| Q |
345 |
ttagtttgttcatgtattaattaagcaagatttccttgtatattgtgtgcaaataattgaggattcgttctacctttg |
422 |
Q |
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| T |
46690068 |
ttagtttgttcatgtattaattaagcaagatttccttgtatattgtgtgcaaataattgaggattcgttctacctttg |
46689991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 46690391 - 46690262
Alignment:
| Q |
20 |
agtcaagtgttagggttactttaaatccaactaatactatccagttgtgtttccttgaactctctgaagatggtggaacagccacacgatcagaagaact |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46690391 |
agtcaagtgttagggttactttaaatccaactaatactatccacttgtgtttccttgaactctctgaagatggtggaacagccacacgatcagaataact |
46690292 |
T |
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| Q |
120 |
cctttgtttccatgtcgtcacaagaacagg |
149 |
Q |
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| T |
46690291 |
cctttgtttccatgtcgtcacaagaacagg |
46690262 |
T |
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