View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6640_low_3 (Length: 367)
Name: NF6640_low_3
Description: NF6640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6640_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 1097414 - 1097753
Alignment:
| Q |
17 |
agaaaaaactggaaattaaaatgtataggtttaagagtttcatgcagcaacctttatcgctgcatcttttacgataagactcaagaaaatttatagcatc |
116 |
Q |
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| T |
1097414 |
agaaaaaactggaaattaaaatgtataggtttaagagtttcatgcagcaacctttatcgctgcatcttttacgataagactcaagaaaatttatagcatc |
1097513 |
T |
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| Q |
117 |
atccgagaaaaggtgccaaaagaagtcttcgacctttatctgcagtttgtgaattaaaaacagagaacagcctcataaattcgaaaattaatatcatcaa |
216 |
Q |
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| T |
1097514 |
atccgagaaaaggtgccaaaagaagtcttcgacctttatctgcagtttgtgaattaaaaacagagaacagcctcataaattcgaaaattaatatcatcaa |
1097613 |
T |
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| Q |
217 |
atttaccatgaagtttagaaaaatataatcagacataatcatttcaaataagttagtaccggaaatattgattctgcaacacatgtataagcttctgtgg |
316 |
Q |
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| T |
1097614 |
atttaccatgaagtttagaaaaatataatcagacataatcatttcaaataagttagtaccggaaatattgattctgcaacacatgtataagcttctgtgg |
1097713 |
T |
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| Q |
317 |
ctgcataaaagaaaataagttcaaatcatcagcaattcat |
356 |
Q |
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| T |
1097714 |
ctgcataaaaaaaaataagttcaaatcatcagcaattcat |
1097753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 26 - 356
Target Start/End: Complemental strand, 1064628 - 1064297
Alignment:
| Q |
26 |
tggaaattaaaatgtataggtttaagagtttcatgcag-caacctttatcgctgcatcttttacgataagactcaagaaaatttatagcatcatccgaga |
124 |
Q |
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||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1064628 |
tggaaattaaaatctataggtttaagagtttcatgcaggctacctttatcgccgcatcttttacgataagactcaagaaaatttatagcatcatccgaga |
1064529 |
T |
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| Q |
125 |
aaaggtgccaaaagaagtcttcgacctttatctgcagtttgtgaattaaaaacagagaacagcctcataaattcgaaaattaatatcatcaaatttacca |
224 |
Q |
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| T |
1064528 |
aaaagtaccaaaagaagtcttcaacctttatctgcagtttgtgaattaaaaacagagaacaacctcataaattcgaaaattaatattatcaaatttacca |
1064429 |
T |
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| Q |
225 |
tgaagtttagaaaaatataatcagacataatcatttcaaataagttagtaccggaaatattgattctgcaacacatgtataagcttctgtggctgcataa |
324 |
Q |
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| T |
1064428 |
cgaagtttagaaaaatataatcagacgtaatcatttcaaataaattagtaccggaaatattgattctgcaacgcacgtataagcttctggggctgcataa |
1064329 |
T |
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| Q |
325 |
aagaaaataagttcaaatcatcagcaattcat |
356 |
Q |
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| T |
1064328 |
cagaaaataagttcaaatcatcagcaattcat |
1064297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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