View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6640_low_6 (Length: 244)

Name: NF6640_low_6
Description: NF6640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6640_low_6
NF6640_low_6
[»] chr4 (1 HSPs)
chr4 (8-228)||(25411409-25411621)
[»] chr2 (2 HSPs)
chr2 (8-68)||(41838088-41838148)
chr2 (4-67)||(13798903-13798966)
[»] chr6 (1 HSPs)
chr6 (8-57)||(16185254-16185303)
[»] chr1 (2 HSPs)
chr1 (4-51)||(23603248-23603295)
chr1 (7-51)||(17694738-17694782)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 25411621 - 25411409
Alignment:
Q  8 ttttttagtcatttagatgtgtttctaggaactattggatgtcaggaaagtaaccatcttaagagtttacttcacactttagagattgtggaattgtgga 107  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||           
T  25411621 ttttttagtcatgtacatgtgtttctaggaactattggatgtcaggaaagcaaccatcttaagagtttacttcacactttagagattgtcgaa------- 25411529  T
Q  108 agaccaaaaacacatttctattttaaaagccttcttttccacaagtacgcatgtttcaattcgcattatatttctttgttgttcaagcatcatgctctct 207  Q
     ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  25411528 -gaccaaaaacacattgctatttgaaaagccttcttttccacaagtacgcatgtttcaatttgcataatatttctttgttgttcaagcatcatgctctct 25411430  T
Q  208 ccaaatagcactcttcctaat 228  Q
    |||||||||||||||||||||    
T  25411429 ccaaatagcactcttcctaat 25411409  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 41838148 - 41838088
Alignment:
Q  8 ttttttagtcatttagatgtgtttctaggaactattggatgtcaggaaagtaaccatctta 68  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||    
T  41838148 ttttttagtcatttacatgtgtttccaggaactattggatgtcagaaaagcaaccatctta 41838088  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 13798903 - 13798966
Alignment:
Q  4 tgggttttttagtcatttagatgtgtttctaggaactattggatgtcaggaaagtaaccatctt 67  Q
    ||||||||||| || |||| ||||||||||||||||||||| |||| |  |||| |||||||||    
T  13798903 tgggttttttaatcttttacatgtgtttctaggaactattgaatgtaaaaaaagcaaccatctt 13798966  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 16185303 - 16185254
Alignment:
Q  8 ttttttagtcatttagatgtgtttctaggaactattggatgtcaggaaag 57  Q
    |||||| |||||||| |||||||||||| |||||||||||||||| ||||    
T  16185303 ttttttcgtcatttacatgtgtttctagaaactattggatgtcagaaaag 16185254  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 23603295 - 23603248
Alignment:
Q  4 tgggttttttagtcatttagatgtgtttctaggaactattggatgtca 51  Q
    |||||||||||||| |||| |||||||| |||||||||||| ||||||    
T  23603295 tgggttttttagtcttttacatgtgtttataggaactattgaatgtca 23603248  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 17694782 - 17694738
Alignment:
Q  7 gttttttagtcatttagatgtgtttctaggaactattggatgtca 51  Q
    |||||||| |||||| |||||||||||||||| ||||||| ||||    
T  17694782 gttttttaatcattttgatgtgtttctaggaaatattggaagtca 17694738  T

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