View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_high_106 (Length: 246)

Name: NF6641_high_106

Description: NF6641

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6641_high_106

[»] chr7 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 192; E-Value: 1e-104

Query Start/End: Original strand, 17 - 216

Target Start/End: Complemental strand, 40811922 - 40811723

Alignment:

Q	17	caagttcggcttgaagcaccaagatcattcatctgtaatgtttgttgttattgctttatctgtatagtttctttttctttaacttcatgaattgtgatgt	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40811922	caagttcggcttgaagcaccaagatcattcatctgtaatgtttgttgttattgctttatctatatagtttctttttctttaacttcatgaattgtgatgt	40811823	T

Q	117	ttaggggccgatatgtcaatgtccaatgattggcttcaaataattttcaactaagaggactttacatcaattttcatgttaatagtcaactaagaggatc	216	Q
		\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40811822	ttgggggccgatatgtcaatgtccaatgattggcttcaaataattttcaactaagaggactttacatcaattttcatgttaatagtcaactaagaggatc	40811723	T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 130 - 205

Target Start/End: Complemental strand, 35246083 - 35246008

Alignment:

Q	130	tgtcaatgtccaatgattggcttcaaataattttcaactaagaggactttacatcaattttcatgttaatagtcaa	205	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \| \|\| \|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|
T	35246083	tgtcaatgtccaataattggctttacatgatcttcagctaagagaactttaaatcaattttcatgtgagtagtcaa	35246008	T

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