View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_high_120 (Length: 236)

Name: NF6641_high_120
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_high_120
NF6641_high_120
[»] chr8 (14 HSPs)
chr8 (50-153)||(15609113-15609216)
chr8 (40-153)||(15652966-15653080)
chr8 (41-153)||(15650892-15651005)
chr8 (40-145)||(15627126-15627232)
chr8 (70-153)||(15923041-15923124)
chr8 (40-153)||(15617492-15617602)
chr8 (40-153)||(15640668-15640778)
chr8 (40-153)||(15629123-15629237)
chr8 (43-150)||(15989890-15989999)
chr8 (43-119)||(15971175-15971254)
chr8 (171-220)||(15609330-15609379)
chr8 (171-220)||(15653193-15653242)
chr8 (42-96)||(12139099-12139153)
chr8 (178-220)||(15629357-15629399)


Alignment Details
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 15609113 - 15609216
Alignment:
Q  50 ttatcattatttcaaatattatttgtaattatttatcaaaataaaaactattctcttgtagaatcaacaactgaaattattggcagcagcaattctattt 149  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15609113 ttatcattctttcaaatagtatttgtaattatttatcaaaataaaaactattctcttgtagaatcaacaactgaaattattggcagcagcaattctattt 15609212  T
Q  150 tata 153  Q
    ||||    
T  15609213 tata 15609216  T

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Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 15652966 - 15653080
Alignment:
Q  40 gtatgatatcttatcattatttcaaatattatttgtaattatttatcaaaataaaa-actattctcttgtagaatcaacaactgaaattattggcagcag 138  Q
    |||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15652966 gtatgatatcttatcattctttcaaatagtatttgtaattatttgtcaaaataaaaaactattctcttgtagaatcaacaactgaaattattggcagcag 15653065  T
Q  139 caattctattttata 153  Q
    |||||||||||||||    
T  15653066 caattctattttata 15653080  T

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Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 15650892 - 15651005
Alignment:
Q  41 tatgatatcttatcattatttcaaatattatttgtaattatttatcaaaataaaa-actattctcttgtagaatcaacaactgaaattattggcagcagc 139  Q
    |||||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15650892 tatgatatcttatcgttctttcaaatagtatttgtaattatttatcaaaataaaaaactattctcttgtagaatcaacaactgaaattattggcagcagc 15650991  T
Q  140 aattctattttata 153  Q
    ||||||||||||||    
T  15650992 aattctattttata 15651005  T

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Target: chr8; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 15627126 - 15627232
Alignment:
Q  40 gtatgatatcttatcattatttcaaatattatttgtaattatttatcaaaataaaa-actattctcttgtagaatcaacaactgaaattattggcagcag 138  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15627126 gtatgatatcttatcgttctttcaaatagtatttgtaattatttatcaaaataaaaaactattctcttgtagaatcaacaactgaaattattggcagcag 15627225  T
Q  139 caattct 145  Q
    |||||||    
T  15627226 caattct 15627232  T

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Target: chr8; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 15923041 - 15923124
Alignment:
Q  70 atttgtaattatttatcaaaataaaaactattctcttgtagaatcaacaactgaaattattggcagcagcaattctattttata 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15923041 atttgtaattatttatcaaaataaaaactattctcttgtagaatcaacaactgaaattattggcagcagcaattctattttata 15923124  T

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Target: chr8; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 15617492 - 15617602
Alignment:
Q  40 gtatgatatcttatcattatttcaaatattatttgtaattatttatcaaaataaaa-actattctcttgtagaatcaacaactgaaattattggcagcag 138  Q
    |||||||||||||||||| ||||||||| |||||||||||||    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15617492 gtatgatatcttatcattctttcaaatagtatttgtaattat----caaaataaaaaactattctcttgtagaatcaacaactgaaattattggcagcag 15617587  T
Q  139 caattctattttata 153  Q
    |||||||||||||||    
T  15617588 caattctattttata 15617602  T

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Target: chr8; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 15640668 - 15640778
Alignment:
Q  40 gtatgatatcttatcattatttcaaatattatttgtaattatttatcaaaataaaa-actattctcttgtagaatcaacaactgaaattattggcagcag 138  Q
    |||||||||||||||||| ||||||||| |||||||||||||    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15640668 gtatgatatcttatcattctttcaaatagtatttgtaattat----caaaataaaaaactattctcttgtagaatcaacaactgaaattattggcagcag 15640763  T
Q  139 caattctattttata 153  Q
    |||||||||||||||    
T  15640764 caattctattttata 15640778  T

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Target: chr8; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 15629123 - 15629237
Alignment:
Q  40 gtatgatatcttatcattatttcaaatattatttgtaattatttatcaaaata-aaaactattctcttgtagaatcaacaactgaaattattggcagcag 138  Q
    ||||||||| |||||||| ||||||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  15629123 gtatgatatattatcattctttcaaatagtaagtgtaattatttatcaaaatagaaaactattctcttgtagaatcaacaactgaaattattggcagcaa 15629222  T
Q  139 caattctattttata 153  Q
    || ||||||||||||    
T  15629223 catttctattttata 15629237  T

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Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 15989999 - 15989890
Alignment:
Q  43 tgatatcttatcattatttcaaatattatttgtaattatttatcaaaa-taaaaactattctcttgtagaatcaacaactg-aaattattggcagcagca 140  Q
    |||| |||||||||| |||| |||| ||||||||||||||||||||||  ||||| ||| |||||||||||||||||| || ||| ||||||||||| ||    
T  15989999 tgatttcttatcattctttcgaatagtatttgtaattatttatcaaaacaaaaaattatcctcttgtagaatcaacaagtgcaaaatattggcagcaaca 15989900  T
Q  141 attctatttt 150  Q
    ||||||||||    
T  15989899 attctatttt 15989890  T

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Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 15971254 - 15971175
Alignment:
Q  43 tgatatcttatcattatttcaaatattatttgtaattatttatcaaaata---aaaactattctcttgtagaatcaacaa 119  Q
    |||| ||||||| || ||||||||| ||||||||||||||||||||||||   |||| ||| ||||||||||||||||||    
T  15971254 tgatttcttatcgttctttcaaatagtatttgtaattatttatcaaaataaaaaaaattatgctcttgtagaatcaacaa 15971175  T

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Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 15609330 - 15609379
Alignment:
Q  171 caactcgtgtagcttatttacgtatagttttttcaatcgtatgtttcttt 220  Q
    ||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  15609330 caactcgtgtagcttattgtcgtatagttttttcaatcttatgtttcttt 15609379  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 15653193 - 15653242
Alignment:
Q  171 caactcgtgtagcttatttacgtatagttttttcaatcgtatgtttcttt 220  Q
    |||||| |||||||||||  |||||||||||||||||| |||||||||||    
T  15653193 caactcatgtagcttattgtcgtatagttttttcaatcttatgtttcttt 15653242  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 12139099 - 12139153
Alignment:
Q  42 atgatatcttatcattatttcaaatattatttgtaattatttatcaaaataaaaa 96  Q
    ||||| |||||||||| |||||||||  |||| |||||||||||||| |||||||    
T  12139099 atgatctcttatcattctttcaaatagcatttttaattatttatcaatataaaaa 12139153  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 15629357 - 15629399
Alignment:
Q  178 tgtagcttatttacgtatagttttttcaatcgtatgtttcttt 220  Q
    |||||||||||  |||||||||||||||||| |||||||||||    
T  15629357 tgtagcttattgtcgtatagttttttcaatcttatgtttcttt 15629399  T

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