View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_122 (Length: 231)
Name: NF6641_high_122
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_122 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 35202002 - 35202140
Alignment:
| Q |
5 |
aacaaattgacacaggttccatctcactctctttctctatctcaattattagacaaaaatacatgaccactcaaattttgttgttttcctcttggaacag |
104 |
Q |
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| T |
35202002 |
aacaaattgacacaggttccatctcactctctttctctatctcaattattagacaaaaatacatgaccactcaaattttgttgttttcctcttggaacag |
35202101 |
T |
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| Q |
105 |
aatatagccactgactaaaacatgcaccaccttaaaaca |
143 |
Q |
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| T |
35202102 |
aatatagccactgactaaaacatgcaccaccttaaaaca |
35202140 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 35202176 - 35202228
Alignment:
| Q |
179 |
tatctaatttgtttttcttatcctattgtaggctgagatagatgatcataagg |
231 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35202176 |
tatctaatttttttttcttatcctattgtaggctgagatagatgatcttaagg |
35202228 |
T |
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