View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_125 (Length: 229)
Name: NF6641_high_125
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_125 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 43132336 - 43132546
Alignment:
| Q |
1 |
atcaatcttacaagttagttctacaatatctacatgacgtggtttgatcaggtgcatctatnnnnnnngttttacacataaaaattaaatacagaaaatt |
100 |
Q |
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| T |
43132336 |
atcaatcttacaagttagttctacaatatccacatgacgtggtttgatcaggtgcatctataaaaaa-gttttacacataaaa-ttaaatacagaaaatt |
43132433 |
T |
|
| Q |
101 |
attcttcacatatgcacgataaacaaatgaggaaaggttcacaaaatatgagttgagtctattgaaaagagttacaactaacctgccacaacatatcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43132434 |
attcttcacatatgcacgataaacaaatgaggaaaggttcacaaaatatgagttgagtctattgaaaagagttacaactaacctgccacaacttatcaaa |
43132533 |
T |
|
| Q |
201 |
ataaggttcaaat |
213 |
Q |
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||||||||||||| |
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| T |
43132534 |
ataaggttcaaat |
43132546 |
T |
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