View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_129 (Length: 220)
Name: NF6641_high_129
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_129 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 28666063 - 28666270
Alignment:
| Q |
1 |
cattaattgaacatgttcaatggttgttaacagttgcatgcttccactaggtgcatttaatatgactttgaattgtgtgagatgttctagtagtaattga |
100 |
Q |
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| T |
28666063 |
cattaattgaacatgttcaatggttgttaacagttgtatgcttccactaggtgcatttaatatgactttgaattgtgtgagatgttctactagtaattga |
28666162 |
T |
|
| Q |
101 |
cagattttccaggttggtgttttcctataaaatttgactctattgaagaggtgtttgtttttagattttcaacacaaagtttgaaatattcatttattat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28666163 |
cagattttccaggttggtgttttcctataaaatttgactctattgaagaggtgtttgtttttagattttcaacacaaagtttgaaatattcatttattat |
28666262 |
T |
|
| Q |
201 |
gatatgat |
208 |
Q |
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|||||||| |
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| T |
28666263 |
gatatgat |
28666270 |
T |
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