View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_high_18 (Length: 536)

Name: NF6641_high_18
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_high_18
NF6641_high_18
[»] chr4 (12 HSPs)
chr4 (18-528)||(33334130-33334629)
chr4 (284-474)||(45976128-45976320)
chr4 (290-397)||(10317103-10317208)
chr4 (327-397)||(8892660-8892729)
chr4 (290-383)||(53722019-53722110)
chr4 (345-396)||(3770909-3770960)
chr4 (330-397)||(31670142-31670208)
chr4 (290-369)||(43683731-43683808)
chr4 (345-396)||(44147090-44147141)
chr4 (345-396)||(44151625-44151676)
chr4 (290-397)||(27186154-27186263)
chr4 (275-304)||(53785842-53785871)
[»] chr6 (11 HSPs)
chr6 (275-468)||(17159594-17159789)
chr6 (278-386)||(7888209-7888317)
chr6 (416-529)||(7888095-7888210)
chr6 (276-402)||(17163625-17163752)
chr6 (290-397)||(17096314-17096419)
chr6 (327-397)||(17895763-17895832)
chr6 (265-431)||(21417106-21417272)
chr6 (271-397)||(8320082-8320204)
chr6 (290-397)||(8315543-8315649)
chr6 (327-397)||(14531827-14531896)
chr6 (328-383)||(17779964-17780018)
[»] chr2 (9 HSPs)
chr2 (276-468)||(29767938-29768132)
chr2 (276-462)||(26440372-26440559)
chr2 (275-342)||(22558544-22558611)
chr2 (290-397)||(8050851-8050956)
chr2 (330-397)||(12999504-12999570)
chr2 (345-396)||(36670570-36670621)
chr2 (345-396)||(36675118-36675169)
chr2 (276-371)||(27403696-27403791)
chr2 (290-397)||(8055404-8055509)
[»] chr7 (10 HSPs)
chr7 (276-436)||(13828101-13828262)
chr7 (275-384)||(8674961-8675068)
chr7 (276-397)||(733706-733826)
chr7 (290-397)||(35705646-35705752)
chr7 (345-396)||(7940122-7940173)
chr7 (345-396)||(7944675-7944726)
chr7 (290-388)||(47419627-47419723)
chr7 (290-383)||(27761409-27761500)
chr7 (345-397)||(22901221-22901273)
chr7 (345-383)||(27756911-27756949)
[»] chr5 (16 HSPs)
chr5 (275-470)||(33823882-33824070)
chr5 (312-397)||(20830368-20830452)
chr5 (327-397)||(32486025-32486094)
chr5 (332-397)||(19502362-19502426)
chr5 (290-397)||(30695305-30695410)
chr5 (327-397)||(26336845-26336915)
chr5 (312-397)||(20808680-20808764)
chr5 (306-395)||(43384980-43385067)
chr5 (345-396)||(7099413-7099464)
chr5 (345-396)||(7103982-7104033)
chr5 (345-396)||(12018798-12018849)
chr5 (345-396)||(12023356-12023407)
chr5 (345-396)||(16794175-16794226)
chr5 (345-396)||(16798736-16798787)
chr5 (290-383)||(40371789-40371880)
chr5 (290-388)||(10277216-10277312)
[»] chr8 (13 HSPs)
chr8 (290-397)||(42234734-42234839)
chr8 (290-438)||(41949814-41949962)
chr8 (290-397)||(33071930-33072035)
chr8 (290-397)||(28644574-28644679)
chr8 (290-396)||(43807524-43807628)
chr8 (290-396)||(43812083-43812187)
chr8 (345-396)||(197723-197774)
chr8 (345-396)||(202241-202292)
chr8 (345-396)||(312560-312611)
chr8 (345-396)||(317078-317129)
chr8 (345-397)||(30405860-30405912)
chr8 (290-397)||(30410369-30410474)
chr8 (313-356)||(31474662-31474704)
[»] chr3 (12 HSPs)
chr3 (290-397)||(9697598-9697705)
chr3 (327-397)||(43547772-43547842)
chr3 (279-375)||(53353037-53353131)
chr3 (345-384)||(755895-755934)
chr3 (290-397)||(11004443-11004548)
chr3 (330-397)||(21847162-21847228)
chr3 (330-397)||(21850252-21850318)
chr3 (345-396)||(54171963-54172014)
chr3 (273-436)||(9105272-9105433)
chr3 (345-396)||(54167383-54167434)
chr3 (350-384)||(755824-755858)
chr3 (290-388)||(39399171-39399267)
[»] scaffold0440 (2 HSPs)
scaffold0440 (327-396)||(7555-7623)
scaffold0440 (345-396)||(3047-3098)
[»] chr1 (4 HSPs)
chr1 (268-383)||(16588532-16588643)
chr1 (290-395)||(43591863-43591966)
chr1 (290-388)||(10504448-10504544)
chr1 (345-397)||(39793896-39793948)
[»] scaffold0044 (2 HSPs)
scaffold0044 (345-396)||(44904-44955)
scaffold0044 (345-396)||(49484-49535)


Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Complemental strand, 33334629 - 33334130
Alignment:
Q  18 ctaatttgcagaaacagttgcgccttgttgcttggatctccattggtaacaccatcgaaggcaatatggatgacaacttcctcaacaatcctatagtaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  33334629 ctaatttgcagaaacagttgcgccttgttgcttggatctccattggtaacaccatcgaaggcaatatcgatgacaacttcctcaacaatcctaaagtaga 33334530  T
Q  118 tatgggtttagtggaaatatgtgcaacaattattgtgctgctggttagacacaggcttcatcgggattcattctagtttgttggtcaagttttacgccat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33334529 tatgggtttagtggaaatatgtgcaacaattattgtgctgctggttagacacaggcttcatcgggattcattctagtttgttggtcaagttttacgccat 33334430  T
Q  218 tttcaatggttttcgcttagcaatgactcaactctcaagggttcaacaatgttgttattgttagtttagttgttaattcaagtttacattagtgataatc 317  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33334429 tttcaatggttttcgcttagcaatggctcaactctcaagggttcaacaatgttgttattgttagtttagttgttaattcaagtttacattagtgataatc 33334330  T
Q  318 atgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataagagttagggttgtt-ctttact 416  Q
    |||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33334329 atgtttagttgattaatcacactttgattttagtt------------tgttacaagttggttagagtttagaaaataagagttagggttgttactttact 33334242  T
Q  417 tgtgcttcaagtaacctaacacatgcttgttataagttcattccttgtacaattttcatatctcaataatacatttcattttatcaattctattcactta 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33334241 tgtgcttcaagtaacctaacacatgcttgttataagttcattccttgtacaattttcatatctcaataatacatttcattttatcaattctattcactta 33334142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 284 - 474
Target Start/End: Complemental strand, 45976320 - 45976128
Alignment:
Q  284 tagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag 383  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||  ||| |||||||||||||||||||||||||||||||  ||||||    
T  45976320 tagtagttaattcaagtttacattagtggtaatcatgcttagttgattaatcacatcttg-ttttagtttgttttgaagtttgttacaagttttttagag 45976222  T
Q  384 -tttagaaaataagagttagggttgtt-ctttacttgtgcttcaagtaacctaacacatgcttgt-tataagttcattccttgtacaattttca 474  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||||    
T  45976221 ttttagaaaataagagttagggttgttactttacttgtgcttcaagtaacctaacacttgcttgtatataagctcattccttgtacatttttca 45976128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 290 - 397
Target Start/End: Complemental strand, 10317208 - 10317103
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 389  Q
    ||||||||||||||  ||||| |||||||   | || ||||||||||||||||| || ||||||||| |||||||||||||||||| ||||||| ||||     
T  10317208 ttaattcaagtttagtttagttataatcacaatcag-tgattaatcacactttg-ttgtagtttgttatgaagtttgttacaagtttgttagaggttagc 10317111  T
Q  390 aaataaga 397  Q
    ||||||||    
T  10317110 aaataaga 10317103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 8892729 - 8892660
Alignment:
Q  327 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 397  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||| || ||||||| |||| ||||||||    
T  8892729 tgattaatcacattttg-ttttagtttgttatgaagtttgttacaaatttgttagagattagcaaataaga 8892660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 383
Target Start/End: Original strand, 53722019 - 53722110
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag 383  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| |||| |||||||||||| |||||||||||||||||| |||||||    
T  53722019 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagag 53722110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 3770909 - 3770960
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  3770909 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 3770960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 397
Target Start/End: Original strand, 31670142 - 31670208
Alignment:
Q  330 ttaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 397  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  31670142 ttaatcacagtttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga 31670208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 369
Target Start/End: Complemental strand, 43683808 - 43683731
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgtta 369  Q
    ||||||||||||||  |||||||||||||   | || ||||||||||||||||| |||||||||||| ||||||||||||    
T  43683808 ttaattcaagtttattttagtgataatcacaatcag-tgattaatcacactttg-ttttagtttgttatgaagtttgtta 43683731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 44147090 - 44147141
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  44147090 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 44147141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 44151625 - 44151676
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  44151625 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 44151676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 397
Target Start/End: Original strand, 27186154 - 27186263
Alignment:
Q  290 ttaattcaagtttacatt-agtgataatcatgtttagttgattaatcacactttgatttt-agttt-gttttgaagtttgttacaagttggttagagttt 386  Q
    ||||||||||||||  || |||||||||||   ||||| ||||||||||| |||| |||| ||||| ||| |||||||||||||||||| ||||||| ||    
T  27186154 ttaattcaagtttagttttagtgataatcacaattagt-gattaatcacattttgttttttagttttgttatgaagtttgttacaagtttgttagaggtt 27186252  T
Q  387 agaaaataaga 397  Q
    || ||||||||    
T  27186253 agcaaataaga 27186263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 304
Target Start/End: Original strand, 53785842 - 53785871
Alignment:
Q  275 ttgttagtttagttgttaattcaagtttac 304  Q
    ||||||||||||||||||||||||||||||    
T  53785842 ttgttagtttagttgttaattcaagtttac 53785871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 8e-53; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 275 - 468
Target Start/End: Original strand, 17159594 - 17159789
Alignment:
Q  275 ttgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagt 374  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||| |||| |||||| |||||||||||||||| |||||||||||||    
T  17159594 ttgttagtttagttgataattcaagtttagattagtgataatcatgattagttgattgatcatactttg-ttttagtttgttttgacgtttgttacaagt 17159692  T
Q  375 tggttag--agtttagaaaataagagttagggttgttctttacttgtgcttcaagtaacctaacacatgcttgt-tataagttcattccttgtacaa 468  Q
    |||||||  | ||||| |||||||||| || ||||||  |||||||||||||||||||| |||||| |||| || |||||| |||||||||||||||    
T  17159693 tggttagaaattttaggaaataagagtcagagttgttacttacttgtgcttcaagtaacataacacttgctcgtatataagctcattccttgtacaa 17159789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 278 - 386
Target Start/End: Complemental strand, 7888317 - 7888209
Alignment:
Q  278 ttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttgg 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  7888317 ttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaactttg 7888218  T
Q  378 ttagagttt 386  Q
    |||||||||    
T  7888217 ttagagttt 7888209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 416 - 529
Target Start/End: Complemental strand, 7888210 - 7888095
Alignment:
Q  416 ttgtgcttcaagtaacctaacacatgcttgt-tataagttcattccttgtacaatttt-catatctcaataatacatttcattttatcaattctattcac 513  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  7888210 ttgtgcttcaagtaacctaacacatgcttgtatataagctcattccttgtacaatttttcatatctcaataatacaattcattttatcaattctattcac 7888111  T
Q  514 ttacgctttcttctca 529  Q
    || | |||||||||||    
T  7888110 ttgctctttcttctca 7888095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 276 - 402
Target Start/End: Original strand, 17163625 - 17163752
Alignment:
Q  276 tgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagtt 375  Q
    |||||||||||||| ||||||||||||| ||||||||| ||| || |||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  17163625 tgttagtttagttgataattcaagtttagattagtgatgatcgtgattagttgattgatcacactttg-ttttagtttgttttgaagtttgttacaagtt 17163723  T
Q  376 ggttaga--gtttagaaaataagagttag 402  Q
    |||||||   ||||| |||||||||||||    
T  17163724 ggttagaagttttaggaaataagagttag 17163752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 290 - 397
Target Start/End: Complemental strand, 17096419 - 17096314
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 389  Q
    ||||||||||||||  |||||||||||||   | || |||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| ||||     
T  17096419 ttaattcaagtttagtttagtgataatcacaatcag-tgattaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagc 17096322  T
Q  390 aaataaga 397  Q
    | ||||||    
T  17096321 agataaga 17096314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 17895832 - 17895763
Alignment:
Q  327 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 397  Q
    |||||||||||| ||| ||||||||||||| |||||||||||||||||| ||||||| |||| ||||||||    
T  17895832 tgattaatcacatttt-attttagtttgttctgaagtttgttacaagtttgttagaggttagcaaataaga 17895763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 431
Target Start/End: Complemental strand, 21417272 - 21417106
Alignment:
Q  265 aatgttgttattgttagttt-agttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagt 363  Q
    |||||| ||||||||||||| ||||| ||||||||||| |  |||||  |||||||  |||| ||||| || |||||||| |||||||| ||||||||||    
T  21417272 aatgttattattgttagttttagttgataattcaagtt-agtttagtattaatcataattagctgattgattacactttg-ttttagtt-gttttgaagt 21417176  T
Q  364 ttgttacaagttggttaga--gtttagaaaataagagttagggttgttctttacttgtgcttcaagtaac 431  Q
    ||||||||||||||||| |   ||||  ||||||| ||||  | ||||  ||||||||||||||||||||    
T  21417175 ttgttacaagttggttacaagctttaagaaataagggttatagctgttacttacttgtgcttcaagtaac 21417106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 271 - 397
Target Start/End: Complemental strand, 8320204 - 8320082
Alignment:
Q  271 gttattgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttac 370  Q
    |||||||||||||| ||| ||||||||||||||  |||||||||||||   | ||| | ||||||||| | || |||||||||||| |||||||||||||    
T  8320204 gttattgttagttt-gtt-ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacaatatg-ttttagtttgttatgaagtttgttac 8320109  T
Q  371 aagttggttagagtttagaaaataaga 397  Q
    ||||| ||||||| |||| | ||||||    
T  8320108 aagtttgttagaggttagtagataaga 8320082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 397
Target Start/End: Complemental strand, 8315649 - 8315543
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 389  Q
    ||||||||||||||  |||||||||||||   | ||| | |||||||||  ||  |||||||||||| |||||||||||||||||| ||||||| ||||     
T  8315649 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagt 8315551  T
Q  390 aaataaga 397  Q
    | ||||||    
T  8315550 agataaga 8315543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 14531896 - 14531827
Alignment:
Q  327 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 397  Q
    |||||||||||| |||| |||||||| ||| |||||||||||||| ||| ||||||| |||| ||||||||    
T  14531896 tgattaatcacattttg-ttttagttcgttatgaagtttgttacaggtttgttagaggttagcaaataaga 14531827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 17779964 - 17780018
Alignment:
Q  328 gattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag 383  Q
    ||||||||||| |||| |||||||||||| |||||||||||| ||||| |||||||    
T  17779964 gattaatcacattttg-ttttagtttgttatgaagtttgttaaaagtttgttagag 17780018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 8e-50; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 276 - 468
Target Start/End: Original strand, 29767938 - 29768132
Alignment:
Q  276 tgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagtt 375  Q
    |||||||||||||| |||||||||||||  ||||||||||||||| ||| |||||| ||||||||||| |||||||||||||| ||||||||||||||||    
T  29767938 tgttagtttagttgataattcaagtttagtttagtgataatcatgattaattgattgatcacactttg-ttttagtttgttttaaagtttgttacaagtt 29768036  T
Q  376 ggttaga--gtttagaaaataagagttagggttgttctttacttgtgcttcaagtaacctaacacatgcttgt-tataagttcattccttgtacaa 468  Q
    ||||| |   ||||| ||||||||||||| ||||||  |||||||||||||||||||| |||||  ||||||| |||||| |||||||||||||||    
T  29768037 ggttataagttttaggaaataagagttagagttgttacttacttgtgcttcaagtaacataacaattgcttgtatataagctcattccttgtacaa 29768132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 276 - 462
Target Start/End: Original strand, 26440372 - 26440559
Alignment:
Q  276 tgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagtt 375  Q
    |||||||||| | | |||||||| ||||  ||||| ||||||||| ||| |||||| |||||| ||| ||||||||||||||| ||||| ||||||||||    
T  26440372 tgttagtttaatggataattcaaatttagtttagtaataatcatgattatttgattgatcacatttt-attttagtttgttttaaagtt-gttacaagtt 26440469  T
Q  376 ggttaga--gtttagaaaataagagttagggttgttctttacttgtgcttcaagtaacctaacacatgcttgt-tataagttcattcctt 462  Q
    |||||||   |||||  |||||||| ||  || |||  |||||||||||||||||||| |||||| ||||||| |||||| |||||||||    
T  26440470 ggttagaagctttagcgaataagagctaaagtagttacttacttgtgcttcaagtaacataacacttgcttgtatataagctcattcctt 26440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 22558611 - 22558544
Alignment:
Q  275 ttgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacacttt 342  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||||||| |||| |||||||||||||    
T  22558611 ttgttagtttaattgataattcaagtttacattaatgataatcatgttttgttggttaatcacacttt 22558544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 397
Target Start/End: Original strand, 8050851 - 8050956
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 389  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | | ||||||||||||| |||||||||||||||||| ||||||| ||||     
T  8050851 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattct-attttagtttgttatgaagtttgttacaagtttgttagaggttagt 8050948  T
Q  390 aaataaga 397  Q
    | ||||||    
T  8050949 agataaga 8050956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 397
Target Start/End: Complemental strand, 12999570 - 12999504
Alignment:
Q  330 ttaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 397  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  12999570 ttaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga 12999504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 36670570 - 36670621
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  36670570 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 36670621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 36675118 - 36675169
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  36675118 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 36675169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 276 - 371
Target Start/End: Complemental strand, 27403791 - 27403696
Alignment:
Q  276 tgttagttt-agttgttaattcaagtttacattagtgataatcatgtttagttg-attaatcacactttgattttagtttgttttgaagtttgttaca 371  Q
    ||||||||| ||||| ||||||||||| |  |||||| |||||||| |||| || ||| || |||||||| |||||||||||||||||||||||||||    
T  27403791 tgttagtttcagttgataattcaagtt-agtttagtgttaatcatgattagctggattgattacactttg-ttttagtttgttttgaagtttgttaca 27403696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 397
Target Start/End: Original strand, 8055404 - 8055509
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 389  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | | ||||||||||||| ||||||||||| |||||| ||||||| ||||     
T  8055404 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattct-attttagtttgttatgaagtttgttgcaagtttgttagaggttagt 8055501  T
Q  390 aaataaga 397  Q
    | ||||||    
T  8055502 agataaga 8055509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 276 - 436
Target Start/End: Complemental strand, 13828262 - 13828101
Alignment:
Q  276 tgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagtt 375  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||| ||||||| ||||||||||||||||||    
T  13828262 tgttagtctagttgttaattcaagtttaccttagtgataatcatgtttagttggttaatcacattttcatttt-gtttgttctgaagtttgttacaagtt 13828164  T
Q  376 ggttagagtttagaaaataagagttagggt-tgtt-ctttacttgtgcttcaagtaacctaac 436  Q
     |||||||| ||   ||||| ||||||||| |||| | || |||||||||||||  |||||||    
T  13828163 tgttagagtgtatctaataatagttagggtctgttacattgcttgtgcttcaagctacctaac 13828101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 384
Target Start/End: Original strand, 8674961 - 8675068
Alignment:
Q  275 ttgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagt 374  Q
    |||||||||| |||  ||||||||||||| ||||||||||||||||||||  || ||||||||||||     |||||||||||||||||||||||| ||     
T  8674961 ttgttagttttgttactaattcaagtttagattagtgataatcatgtttaaatggttaatcacactt--cagttagtttgttttgaagtttgttactagg 8675058  T
Q  375 tggttagagt 384  Q
    | ||||||||    
T  8675059 ttgttagagt 8675068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 276 - 397
Target Start/End: Complemental strand, 733826 - 733706
Alignment:
Q  276 tgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagtt 375  Q
    ||||||||| |||  ||||||||||||| ||||||||||||||||||||  || |||||||||  || |  |||||||||| |||| |||||||||| ||    
T  733826 tgttagttttgttagtaattcaagtttagattagtgataatcatgtttaaatggttaatcacatattca-gttagtttgttatgaaatttgttacaattt 733728  T
Q  376 ggttagagtttagaaaataaga 397  Q
     ||||||| |||| ||||||||    
T  733727 tgttagaggttagcaaataaga 733706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 290 - 397
Target Start/End: Original strand, 35705646 - 35705752
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttt-tgaagtttgttacaagttggttagagtttag 388  Q
    ||||||||||||||  |||||||||||||   | || |||||||||||| |||| ||||||||||||| || ||||||||||||||| ||||||| ||||    
T  35705646 ttaattcaagtttagtttagtgataatcacaatcag-tgattaatcacattttg-ttttagtttgtttatggagtttgttacaagtttgttagaggttag 35705743  T
Q  389 aaaataaga 397  Q
     ||||||||    
T  35705744 caaataaga 35705752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 7940173 - 7940122
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  7940173 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 7940122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 7944726 - 7944675
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  7944726 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 7944675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 388
Target Start/End: Complemental strand, 47419723 - 47419627
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttag 388  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| |||| |||||||||||| ||||||||||||||||||  |||||| ||||    
T  47419723 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattttg-ttttagtttgttatgaagtttgttacaagtttcttagaggttag 47419627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 383
Target Start/End: Original strand, 27761409 - 27761500
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag 383  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | || |||||||||||| |||||||||||||||||| |||||||    
T  27761409 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattctg-ttttagtttgttatgaagtttgttacaagtttgttagag 27761500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 22901221 - 22901273
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 397  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  22901221 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga 22901273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 383
Target Start/End: Original strand, 27756911 - 27756949
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagag 383  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  27756911 ttttagtttgttatgaagtttgttacaagtttgttagag 27756949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 275 - 470
Target Start/End: Original strand, 33823882 - 33824070
Alignment:
Q  275 ttgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagt 374  Q
    |||||| |||||||||||||||| |||||||||| ||| ||||| | |||||||||||||||||||| | |||             ||||||||||||||    
T  33823882 ttgttaatttagttgttaattcatgtttacattaatgacaatcacgattagttgattaatcacacttcgtttt-------------agtttgttacaagt 33823968  T
Q  375 tggttagag--tttagaaaataagagtta--gggttgtt-ctttacttgtgcttcaagtaacctaacacatgcttgt-tataagttcattccttgtacaa 468  Q
    ||||||||   ||||||||||||||||||  |||||||| |||||||| ||||||||||||| |||||| ||||||| |||||| |||||||||||||||    
T  33823969 tggttagaagttttagaaaataagagttatagggttgttactttacttctgcttcaagtaacataacacttgcttgtatataagctcattccttgtacaa 33824068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 312 - 397
Target Start/End: Complemental strand, 20830452 - 20830368
Alignment:
Q  312 ataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 397  Q
    ||||||||||||||||| ||||||||| || | ||| |||||||| |||||||||||||||||| ||||||| |||| ||||||||    
T  20830452 ataatcatgtttagttggttaatcacatttag-tttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataaga 20830368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 32486094 - 32486025
Alignment:
Q  327 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 397  Q
    |||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| ||||||||    
T  32486094 tgattaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaga 32486025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 397
Target Start/End: Original strand, 19502362 - 19502426
Alignment:
Q  332 aatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 397  Q
    ||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||||||||||||    
T  19502362 aatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagaaaataaga 19502426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 397
Target Start/End: Original strand, 30695305 - 30695410
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 389  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| ||||     
T  30695305 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagt 30695402  T
Q  390 aaataaga 397  Q
    | ||||||    
T  30695403 atataaga 30695410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 26336915 - 26336845
Alignment:
Q  327 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 397  Q
    |||||||||||| |||| |||||||||||| ||| |||||||||| ||| ||||||| |||| ||||||||    
T  26336915 tgattaatcacattttgtttttagtttgttatgatgtttgttacatgtttgttagaggttagcaaataaga 26336845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 397
Target Start/End: Complemental strand, 20808764 - 20808680
Alignment:
Q  312 ataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 397  Q
    ||||||||||||||||| ||||||||| |||  ||| |||||||| ||||||| |||||||||| ||||||| |||  ||||||||    
T  20808764 ataatcatgtttagttggttaatcaca-tttagtttcagtttgttatgaagttagttacaagtttgttagaggttaacaaataaga 20808680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 395
Target Start/End: Original strand, 43384980 - 43385067
Alignment:
Q  306 ttagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataa 395  Q
    ||||||||||||||  ||||| | ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||  |||| ||||||    
T  43384980 ttagtgataatcataattagtgg-ttaatcaca-tttgcttttagtttgttatgaagtttgttacaagtttgttagaagttagcaaataa 43385067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 7099464 - 7099413
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  7099464 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 7099413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 7104033 - 7103982
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  7104033 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 7103982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 12018798 - 12018849
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  12018798 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 12018849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 12023356 - 12023407
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  12023356 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 12023407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 16794175 - 16794226
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  16794175 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 16794226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 16798736 - 16798787
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  16798736 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 16798787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 383
Target Start/End: Complemental strand, 40371880 - 40371789
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag 383  Q
    ||||||||||||||  |||||||||||||   | ||  ||||||||||| |||| |||||||||||| ||||| |||||||||||| |||||||    
T  40371880 ttaattcaagtttagtttagtgataatcacaatcaga-gattaatcacattttg-ttttagtttgttatgaagattgttacaagtttgttagag 40371789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 388
Target Start/End: Original strand, 10277216 - 10277312
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttag 388  Q
    ||||||||||||||  |||||||||||||   ||||| | ||||||||| || ||||  |||||||| |||| ||||||||||||| ||||||| ||||    
T  10277216 ttaattcaagtttagtttagtgataatcacaattagtgg-ttaatcacatttagattc-agtttgttatgaattttgttacaagttagttagagattag 10277312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 397
Target Start/End: Complemental strand, 42234839 - 42234734
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 389  Q
    ||||||||||||||  |||||||||||||   | || ||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| ||||     
T  42234839 ttaattcaagtttagtttagtgataatcacaatcag-tgattaatcacactttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagc 42234742  T
Q  390 aaataaga 397  Q
    ||||||||    
T  42234741 aaataaga 42234734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 290 - 438
Target Start/End: Original strand, 41949814 - 41949962
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttaga--gttta 387  Q
    |||||||||| |||  |||||||||||||   | || |||||||||||||| || |||||||||||||||||||||||||||||||||||| |   ||||    
T  41949814 ttaattcaagcttagtttagtgataatcacaatcag-tgattaatcacactctg-ttttagtttgttttgaagtttgttacaagttggttacaagtttta 41949911  T
Q  388 gaaaataagagttagggttgttctttacttgtgcttcaagtaacctaacac 438  Q
      ||||||| ||||  ||||||  ||||||||||||||||| || ||||||    
T  41949912 agaaataagggttatagttgttacttacttgtgcttcaagtgacataacac 41949962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 290 - 397
Target Start/End: Original strand, 33071930 - 33072035
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 389  Q
    ||||||||||||||  |||||||||||||   | || ||||||||||||||||  |||||||||||| |||||||||||||||||| ||| ||| ||||     
T  33071930 ttaattcaagtttagtttagtgataatcacaatcag-tgattaatcacacttt-cttttagtttgttatgaagtttgttacaagtttgttggaggttagc 33072027  T
Q  390 aaataaga 397  Q
    ||||||||    
T  33072028 aaataaga 33072035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 397
Target Start/End: Original strand, 28644574 - 28644679
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 389  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| ||||     
T  28644574 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagc 28644671  T
Q  390 aaataaga 397  Q
    | ||||||    
T  28644672 agataaga 28644679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 290 - 396
Target Start/End: Complemental strand, 43807628 - 43807524
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 389  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | || |||||||||||| |||||||||||||||||| ||||||| ||||     
T  43807628 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattctg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagc 43807531  T
Q  390 aaataag 396  Q
    |||||||    
T  43807530 aaataag 43807524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 290 - 396
Target Start/End: Complemental strand, 43812187 - 43812083
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 389  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | || |||||||||||| |||||||||||||||||| ||||||| ||||     
T  43812187 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattctg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagc 43812090  T
Q  390 aaataag 396  Q
    |||||||    
T  43812089 aaataag 43812083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 197774 - 197723
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  197774 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 197723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 202292 - 202241
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  202292 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 202241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 312611 - 312560
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  312611 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 312560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 317129 - 317078
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  317129 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 317078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 397
Target Start/End: Complemental strand, 30405912 - 30405860
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 397  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  30405912 ttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataaga 30405860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 397
Target Start/End: Complemental strand, 30410474 - 30410369
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 389  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | || ||||| |||||| |||||||||||||||||| ||||||| ||||     
T  30410474 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattctg-ttttaatttgttatgaagtttgttacaagtttgttagaggttagt 30410377  T
Q  390 aaataaga 397  Q
    | ||||||    
T  30410376 agataaga 30410369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 356
Target Start/End: Complemental strand, 31474704 - 31474662
Alignment:
Q  313 taatcatgtttagttgattaatcacactttgattttagtttgtt 356  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  31474704 taatcatgtttagttggttaatcaca-tttgattttagtttgtt 31474662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 290 - 397
Target Start/End: Original strand, 9697598 - 9697705
Alignment:
Q  290 ttaattcaagtttacatt-agtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttag 388  Q
    ||||||||||||||  || |||||||||||   ||||| ||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| ||||    
T  9697598 ttaattcaagtttagttttagtgataatcacaattagt-gattaatcacattttgtttttagtttgttatgaagtttgttacaagtttgttagaggttag 9697696  T
Q  389 aaaataaga 397  Q
     ||||||||    
T  9697697 caaataaga 9697705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 43547772 - 43547842
Alignment:
Q  327 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 397  Q
    |||||||| ||| |||| |||||||||||| |||||||||||||||||| ||||||| |||  ||||||||    
T  43547772 tgattaattacattttgtttttagtttgttatgaagtttgttacaagtttgttagaggttaacaaataaga 43547842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 375
Target Start/End: Complemental strand, 53353131 - 53353037
Alignment:
Q  279 tagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagtt 375  Q
    ||||||||||| ||||||||||| | ||||||| |||||||| |||| ||||| || ||| |||| |||||||||  ||| ||||||||||||||||    
T  53353131 tagtttagttggtaattcaagtt-agattagtgttaatcatgattagatgattgattacattttg-ttttagtttaatttaaagtttgttacaagtt 53353037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 384
Target Start/End: Original strand, 755895 - 755934
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagt 384  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  755895 ttttagtttgttttgaagtttgttacaagtttgttagagt 755934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 397
Target Start/End: Complemental strand, 11004548 - 11004443
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 389  Q
    ||||||||||||||  |||||||||||||   | ||| || |||||||| |||| |||||| ||||| ||||| |||||||||||| ||||||| ||||     
T  11004548 ttaattcaagtttagtttagtgataatcacaatcagt-gaataatcacattttg-ttttagcttgttatgaagattgttacaagtttgttagaggttagc 11004451  T
Q  390 aaataaga 397  Q
    ||||||||    
T  11004450 aaataaga 11004443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 397
Target Start/End: Original strand, 21847162 - 21847228
Alignment:
Q  330 ttaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 397  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  21847162 ttaatcacagtttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga 21847228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 397
Target Start/End: Original strand, 21850252 - 21850318
Alignment:
Q  330 ttaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 397  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  21850252 ttaatcacagtttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga 21850318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 54172014 - 54171963
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  54172014 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 54171963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 436
Target Start/End: Original strand, 9105272 - 9105433
Alignment:
Q  273 tattgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaa 372  Q
    |||||||||||| ||| ||||||||||||||  |||||||||||||   | | | ||||||||||| |||| ||| |||||||| |||||| ||||||||    
T  9105272 tattgttagttt-gtt-ttaattcaagtttagtttagtgataatcacaatcaat-gattaatcacattttgcttt-agtttgttatgaagtatgttacaa 9105367  T
Q  373 gttggttagagtttagaaaataagagttag-ggttgtt-ctttacttgtgcttcaagtaacctaac 436  Q
    ||| ||||||| |||  ||||||||  ||| | ||||| | || ||||||||||||| ||||||||    
T  9105368 gtttgttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaac 9105433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 54167434 - 54167383
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||  |||||||    
T  54167434 ttttagtttgttatgaagtttgttacaagtttgttagaggttaccaaataag 54167383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 384
Target Start/End: Original strand, 755824 - 755858
Alignment:
Q  350 gtttgttttgaagtttgttacaagttggttagagt 384  Q
    |||||||||||||||||||||||||| ||||||||    
T  755824 gtttgttttgaagtttgttacaagtttgttagagt 755858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 388
Target Start/End: Complemental strand, 39399267 - 39399171
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttag 388  Q
    ||||||||||||||  |||||||||||||   ||||| | ||||||||| || ||||  |||||||| |||| ||||||||||||| ||||||| ||||    
T  39399267 ttaattcaagtttagtttagtgataatcacaattagtgg-ttaatcacatttagattc-agtttgttatgaattttgttacaagttagttagagattag 39399171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 7555 - 7623
Alignment:
Q  327 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  7555 tgattaatcacaatttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 7623  T

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Target: scaffold0440; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 3047 - 3098
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  3047 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 3098  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 383
Target Start/End: Complemental strand, 16588643 - 16588532
Alignment:
Q  268 gttgttattgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgt 367  Q
    |||| |||||||||||| ||| ||||||||||||||  |||||||||||||   | ||| | ||||||||| |||| |||||||||||| ||||||||||    
T  16588643 gttgatattgttagttt-gtt-ttaattcaagtttagtttagtgataatcacaataagtgg-ttaatcacattttg-ttttagtttgttatgaagtttgt 16588548  T
Q  368 tacaagttggttagag 383  Q
    |||||||| |||||||    
T  16588547 tacaagtttgttagag 16588532  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 395
Target Start/End: Complemental strand, 43591966 - 43591863
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 389  Q
    ||||||||||||||  |||||||||||||   | || ||||||||| |||||| ||||||||||||| |||||||||||||||  | ||||||| ||||     
T  43591966 ttaattcaagtttagtttagtgataatcacaatcag-tgattaatcgcacttt-attttagtttgttatgaagtttgttacaatattgttagaggttagc 43591869  T
Q  390 aaataa 395  Q
    ||||||    
T  43591868 aaataa 43591863  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 388
Target Start/End: Original strand, 10504448 - 10504544
Alignment:
Q  290 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttag 388  Q
    ||||||||||||||  |||||||||||||   ||||| ||||||||||| || ||||  |||||||| |||| ||||||||||||| ||||||| ||||    
T  10504448 ttaattcaagtttagtttagtgataatcacaattagt-gattaatcacatttagattc-agtttgttatgaattttgttacaagttagttagagattag 10504544  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 39793896 - 39793948
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 397  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  39793896 ttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataaga 39793948  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 44955 - 44904
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  44955 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 44904  T

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Target: scaffold0044; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 49535 - 49484
Alignment:
Q  345 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 396  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  49535 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 49484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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