View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6641_high_21 (Length: 489)
Name: NF6641_high_21
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_21 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 16 - 474
Target Start/End: Complemental strand, 47282153 - 47281696
Alignment:
| Q |
16 |
tcaccaccagtacaatccaccatcaatttgtccctagctccctccctaattcttcccgcaagtggatagtaataaacaagtgtttttgagagtgcacatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47282153 |
tcaccaccagtacaatccaccatcaatttgtccctagctccctccctaattcttcccgcaagtggatagtaataaacaagtgtttttgagagtgcacatt |
47282054 |
T |
|
| Q |
116 |
taagaaccttaacagggtctttctttaccattgatggttcgtgacgatagataaatatgataggcatattgaaacgcaaacattcttgatcatctatgtc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47282053 |
taagaaccttaacagggtctttctttaccattgatggttcgtgacgatagataaatatgataggcatattgaaacgcaaacattcttgatcatctatgtc |
47281954 |
T |
|
| Q |
216 |
agataatagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggcacctccgcactgtgaacaataatggtgatgaagtagtcata |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
47281953 |
agataatagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggcacctccgcactgtcaacaataatggtgatgaagaagtcata |
47281854 |
T |
|
| Q |
316 |
tgatatacaaaaatagaagagttaataggtgtcgtgtttcttttgagtgagttataaatggagttttttgaaaatgatacgta-aacactgaactatcat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
47281853 |
tgatatacaaaaatagaagagttaataggtgtcgtgtttcttttgagtgagttataaatggagt-ttttgaaaatgatacgtacaacactgaactatcat |
47281755 |
T |
|
| Q |
415 |
ggccacaaaaaattgaaaaatggaagaatataaggatcaagttacttttgataaactaag |
474 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47281754 |
ggccac-aaaaattgaaaaatggaagaatctaaggatcaagttacttttgataaactaag |
47281696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 371
Target Start/End: Complemental strand, 47275411 - 47275061
Alignment:
| Q |
20 |
caccagtacaatccaccatcaatttgtccctagctccctccctaattcttcccgcaagtggatagtaataaacaagtgtttttgagagtgcacatttaag |
119 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
47275411 |
caccggtacaatccaccatcaacttgtccctagctccctccctaattcttcccgcaagtggataataataaacaagtgtttgtgagagtgcacgtttaag |
47275312 |
T |
|
| Q |
120 |
aaccttaacagggtctttctttaccattgatggttcgtgacgatagataaatatgataggcatattgaaacgcaaacattcttgatcatctatgtcagat |
219 |
Q |
| |
|
||||||| |||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47275311 |
aaccttagcagggtctttctctatcattgatggttcatgacgatagataaatatgataggcatattgaaacgcaagcattcttgatcatctatgtcagat |
47275212 |
T |
|
| Q |
220 |
aatagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggcacctccgcactgtgaacaataatggtgatgaagtagtcatatgat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
47275211 |
aatagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggcacctccgcactgtgaacaacaatggtgatgaagt-----catgat |
47275117 |
T |
|
| Q |
320 |
atacaaaa----atagaagagttaataggtgtcgtgtttcttttgagtgagttata |
371 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47275116 |
atacaaaactatatataagagttaatatgtgtcgtgtttcttttgagtgagttata |
47275061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 308
Target Start/End: Original strand, 47300940 - 47301226
Alignment:
| Q |
22 |
ccagtacaatccaccatcaatttgtccctagctccctccctaattcttcccgcaagtggatagtaataaacaagtgtttttgagagtgcacatttaagaa |
121 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||| |||||||||| |||||||||||||||||||| || |||||||||| | | |||| |
|
|
| T |
47300940 |
ccagtacaatccaccatcaacttgcgactagctccctccctaatccttcccgcaaatggatagtaataaacaagtgcttgtgagagtgcatgtctcagaa |
47301039 |
T |
|
| Q |
122 |
ccttaacagggtctttctttaccattgatggttcgtgacgatagataaatatgataggcatattgaaacgcaaacattcttgatcatctatgtcagataa |
221 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| |||||||||| || ||||| |||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
47301040 |
ccttaacagggtctttctctgccattgatggttcgtgatgatagataaagatcataggaatattgaagcgcaaaccttcttgatcatctatgtcagataa |
47301139 |
T |
|
| Q |
222 |
tagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggcacctccgcactgtgaacaataatggtgatgaagt |
308 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47301140 |
tagtttaacttcacaaggagtgggtgcagctggtggcaccaactctggttggcacctccgcactgtgaacaacaatggtgatgaagt |
47301226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 47296346 - 47296634
Alignment:
| Q |
20 |
caccagtacaatccaccatcaatttgtccctagctccctccctaattcttcccgcaagtggatagtaataaacaagtgtttttgagagtgcacatttaag |
119 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| | |||| |
|
|
| T |
47296346 |
caccagtacaatccaccatcaacttgcgcccagctccctccctaattcttcccgcaagtggatagtaatacacaagtgttcgtgagagtgcatgtctaag |
47296445 |
T |
|
| Q |
120 |
aaccttaacagggtctttctttaccattgatggttcgtgacgatagataaatatgataggcatattgaaacgcaaacattcttgatcatctatgtcagat |
219 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||| ||| ||||||| |||| || |||||||||||||||||||||| |
|
|
| T |
47296446 |
caccttaagagggtctttctctaccattgatggtttgtggcgatagataaatatgacaggactattgaatcgcataccttcttgatcatctatgtcagat |
47296545 |
T |
|
| Q |
220 |
aatagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggcacctccgcactgtgaacaataatggtgatgaagt |
308 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
47296546 |
aatagtttaacttcacgaggagtgggtgcagctggtggcaccaactctggttggcacctccgcactgtgaacattaacgatgatgaagt |
47296634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 22 - 321
Target Start/End: Complemental strand, 47264841 - 47264542
Alignment:
| Q |
22 |
ccagtacaatccaccatcaatttgtccctagctccctccctaattcttcccgcaagtggatagtaataaacaagtgtttttgagagtgcacatttaagaa |
121 |
Q |
| |
|
||||||||||| |||||||| ||| | ||| ||||||||||| ||||| |||| |||||||||||||||||||| || |||||||||| | |||||| |
|
|
| T |
47264841 |
ccagtacaatcgaccatcaacttgcgtccagcaccctccctaatccttcctgcaaatggatagtaataaacaagtgcttgtgagagtgcatgtctaagaa |
47264742 |
T |
|
| Q |
122 |
ccttaacagggtctttctttaccattgatggttcgtgacgatagataaatatgataggcatattgaaacgcaaacattcttgatcatctatgtcagataa |
221 |
Q |
| |
|
| |||||||| ||||| | | |||||| ||||| |||||||||||||| || ||||| ||||||||||| || | |||||| |||||||||||||| || |
|
|
| T |
47264741 |
ctttaacaggatctttttctttcattgacggttcatgacgatagataaacatcataggaatattgaaacgtaagccttcttggtcatctatgtcagacaa |
47264642 |
T |
|
| Q |
222 |
tagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggcacctccgcactgtgaacaataatggtgatgaagtagtcatatgatat |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||| |
|
|
| T |
47264641 |
tagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggctcctccgcactgtgaacaataatggtgctgaagtcatgatatgatat |
47264542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 28 - 314
Target Start/End: Complemental strand, 47255791 - 47255505
Alignment:
| Q |
28 |
caatccaccatcaatttgtccctagctccctccctaattcttcccgcaagtggatagtaataaacaagtgtttttgagagtgcacatttaagaaccttaa |
127 |
Q |
| |
|
|||||||||||||| ||| || ||| ||||||||||| ||||| ||| |||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
47255791 |
caatccaccatcaacttgcgcccagcaccctccctaatccttcctgcacctggatagtaataaacaagtgttcgtgagagtgcatgtttaagaaccttaa |
47255692 |
T |
|
| Q |
128 |
cagggtctttctttaccattgatggttcgtgacgatagataaatatgataggcatattgaaacgcaaacattcttgatcatctatgtcagataatagttt |
227 |
Q |
| |
|
|||||||||||| | |||||| ||||| |||||| ||| |||||||| ||| | ||||||||| | | |||||||||||| |||||||| | ||||| |
|
|
| T |
47255691 |
cagggtctttctctttcattgaaggttcatgacgaaagacaaatatgacaggaagattgaaacgaaggccttcttgatcatcaatgtcagagaggagttt |
47255592 |
T |
|
| Q |
228 |
aacttcgcgaggagtgggtgcagctggtggcaccaactctggttggcacctccgcactgtgaacaataatggtgatgaagtagtcat |
314 |
Q |
| |
|
|||||| ||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47255591 |
aacttcatgaggagtgggtgcagctggaagtaccaactctggttgggacctccgcactgtgaacaataatggtgatgaagaagtcat |
47255505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 183 - 308
Target Start/End: Complemental strand, 47240814 - 47240689
Alignment:
| Q |
183 |
attgaaacgcaaacattcttgatcatctatgtcagataatagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggcacctccgc |
282 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47240814 |
attgaatcgcaaaccttcttgatcatctatgtcagataatagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggcacctccgc |
47240715 |
T |
|
| Q |
283 |
actgtgaacaataatggtgatgaagt |
308 |
Q |
| |
|
|||||||||| ||| | ||||||||| |
|
|
| T |
47240714 |
actgtgaacattaacgatgatgaagt |
47240689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 450
Target Start/End: Complemental strand, 47275044 - 47274964
Alignment:
| Q |
367 |
ttataaatggagttttttgaaaatgatacgtaaacactgaactatcatggccacaaaaaattgaaaaatggaagaatataagga |
450 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||| | |||| ||||||| |||||| |
|
|
| T |
47275044 |
ttataaatggagttttt-gaaaatgatacgtaca-actgaactatcatggccaca-aaaatttagaaattgaagaatctaagga |
47274964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 32729512 - 32729224
Alignment:
| Q |
20 |
caccagtacaatccaccatcaatttgtccctagctccctccctaattcttcccgcaagtggatagtaataaacaagtgtttttgagagtgcacatttaag |
119 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| ||||||||||| |||||||||| ||| |||||||| ||||||||| |||||||||| | |||| |
|
|
| T |
32729512 |
caccagtacaatccaccatcaacttgcgcctagcaccctccctaatccttcccgcaaatgggtagtaatacacaagtgttcgtgagagtgcatgtctaag |
32729413 |
T |
|
| Q |
120 |
aaccttaacagggtctttctttaccattgatggttcgtgacgatagataaatatgataggcatattgaaacgcaaacattcttgatcatctatgtcagat |
219 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||||| |||||||||||||||||| ||| | |||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
32729412 |
aaccttaatagggtctttctctgccattgatggttcgcgacgatagataaatatgacaggaacattgaaacgcaaaccttcttgatcatctatatcagat |
32729313 |
T |
|
| Q |
220 |
aatagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggcacctccgcactgtgaacaataatggtgatgaagt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32729312 |
aatagtttaacttcgcgaggagtgggtgcaactggtggcaccaactctggttggcacctccgcactgtgaacaacaatggtgatgaagt |
32729224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 20511849 - 20511577
Alignment:
| Q |
20 |
caccagtacaatccaccatcaatttgtccctagctccctccctaattcttcccgcaagtggatagtaataaacaagtgtttttgagagtgcacatttaag |
119 |
Q |
| |
|
||||||||||||||||||| || || | | | |||| |||||||| |||||||||| ||||||||||| |||||| || |||||||||| | |||| |
|
|
| T |
20511849 |
caccagtacaatccaccattaacttttgtccaactccttccctaatccttcccgcaaatggatagtaatgcacaagtacttgtgagagtgcatgtctaag |
20511750 |
T |
|
| Q |
120 |
aaccttaacagggtctttctttaccattgatggttcgtgacgatagataaatatgataggcatattgaaacgcaaacattcttgatcatctatgtcagat |
219 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| ||| |||||||||| |||| | | |||||| |||| | || || ||||||||||||||||||| |
|
|
| T |
20511749 |
aaccttaacagggtctttctttgtcattaatggttcatgatgatagataaagatgagaagaatattgcaacggagacttttttgatcatctatgtcagat |
20511650 |
T |
|
| Q |
220 |
aatagtttaacttcgcgaggagtgggtgcagctggtggcaccaactctggttggcacctccgcactgtgaaca |
292 |
Q |
| |
|
| || ||||| ||| |||||||||||||||||||| || |||| || |||||||||||| ||||| ||||||| |
|
|
| T |
20511649 |
agtattttaaattcacgaggagtgggtgcagctggaggtaccagctgtggttggcaccttcgcacagtgaaca |
20511577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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