View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_23 (Length: 485)
Name: NF6641_high_23
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_23 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 44145170 - 44145637
Alignment:
| Q |
18 |
atatcaaggccagagattcagccatcagaggagatagtgtaatctcttccttccttgtagctgcgaaggccacagaacctgcataactgcgcactagaaa |
117 |
Q |
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| T |
44145170 |
atatcaaggctagggattcaaccatcagaggagatagtgtaatatcttccttccttgtagctgcgaaggccacagaacctgcataactgcgcactagaaa |
44145269 |
T |
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| Q |
118 |
gccataaccagtacaacattcaaaacaaccaacaccaacattaattttcagcctctgtacaggtagagtaatggagtagccacatttggacagagtgttt |
217 |
Q |
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| T |
44145270 |
gccataaccagtacaacattcaaaacaaccaacaccaacattaattttcagcctctgtacaggtagagtaatggagtagccacatttggacagagtgttt |
44145369 |
T |
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| Q |
218 |
ccagttttacaccctttcttgctagattaattcggtcaggactcgggaagatattcatgtctggtatctaaaggaaattcgtcacactattaagtacagt |
317 |
Q |
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| T |
44145370 |
ccagttttacaccctttcttgctagattaattcagtcaggactcgggaagatattcatgtctggtatctaaaggaaattcgtcacactattaagtacagt |
44145469 |
T |
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| Q |
318 |
ggctctccacacttccttccaaaggtcttggcttcttcttccagatgattcaggagcatctttgctcttagtgtctctcaagtgaagaaaaggtatttgc |
417 |
Q |
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| T |
44145470 |
ggctctccacacttccttccaaaggtcttggcttcttctgtaggatgactcgagagcatcttcgctcctagtgtctctcaggagaagagatggtatgggc |
44145569 |
T |
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| Q |
418 |
ataaagagtagtttccatcatatttttaatgctaacaaaccaaaatgaactgtgaatgattttaattt |
485 |
Q |
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| T |
44145570 |
atcaagagtagtttccatcatgtttccaatgccaacataccataatgaaatgggaatgtttctaattt |
44145637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 203 - 485
Target Start/End: Complemental strand, 44156610 - 44156335
Alignment:
| Q |
203 |
ttggacagagtgtttccagttttacaccctttcttgctagattaattcggtcaggactcgggaagatattcatgtctggtatctaaaggaaattcgtcac |
302 |
Q |
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| T |
44156610 |
ttggacaaagtgtttccaattttacaacctttctttctagattaatttggtc-------gggaatatatttatgtctggtatctaaaggaaattcgtcac |
44156518 |
T |
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| Q |
303 |
actattaagtacagtggctctccacacttccttccaaaggtcttggcttcttcttccagatgattcaggagcatctttgctcttagtgtctctcaagtga |
402 |
Q |
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| T |
44156517 |
actattaagtacagtggctctccacacttccttccaaaggtcttggcttcttctgtaggatgactcgagagcatcttcgctcctagtgtctctcaggaga |
44156418 |
T |
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| Q |
403 |
agaaaaggtatttgcataaagagtagtttccatcatatttttaatgctaacaaaccaaaatgaactgtgaatgattttaattt |
485 |
Q |
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| T |
44156417 |
agagatggtatgggcatcaagagtagtttccatcatgtttccaatgccaacataccataatgaaatgggaatgtttctaattt |
44156335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 44158164 - 44158099
Alignment:
| Q |
119 |
ccataaccagtacaacattcaaaacaaccaacaccaacattaattttcagcctctgtacaggtaga |
184 |
Q |
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| T |
44158164 |
ccataaccagtacaatattcaaaacaatcagcatcagcattagttttcagcctatgtacaggtaga |
44158099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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