View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_24 (Length: 481)
Name: NF6641_high_24
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 1253572 - 1253247
Alignment:
| Q |
17 |
atactacacacaaaagagcagcaatatcaaatgtttctgagtagtgctttgatatgtgagaaagtgttttatcagaaattgaagtttgtaa--aagagat |
114 |
Q |
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| T |
1253572 |
atactacacacaaaag--cagcaatatcaaatgtttctgagtagtgctttgatatgtgagaaagtgttttatcagaaattgaagtttgtaacaaaaagat |
1253475 |
T |
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| Q |
115 |
tgttcaattctaatgccacagttttaacatttcaagcataatacaaatcaggatatgaagttctgaaatgtgcagattgataatcaaagctgagtcatat |
214 |
Q |
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| T |
1253474 |
tgttcaattctaatgccacagttttaacatttcaagcataatacaaatcaggatatgaagttctgaaatgtgcagattgataattaaagctgagtcatat |
1253375 |
T |
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| Q |
215 |
attggataaaagataaatttcttcaattaggttctaggcctagttccttaactatgttcgaggtctgtgtgaaagctaggattttttggctcaggtttca |
314 |
Q |
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| T |
1253374 |
attggataaaagataaatttcttcaattatgttctaggcctagttccttaactatgttctaggtctgtgtgaaagctaggattttttggctcaggtttca |
1253275 |
T |
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| Q |
315 |
acaattttatgatgtgaagttttttgat |
342 |
Q |
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| T |
1253274 |
acaattttatgatgtgaagttttttgat |
1253247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 400 - 471
Target Start/End: Complemental strand, 1251386 - 1251315
Alignment:
| Q |
400 |
atggtcctaattattgatgtattttgttttgaaaaatctgatattgctttagcagctggggccatggattgt |
471 |
Q |
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| T |
1251386 |
atggtcctaattattgatgtattttgttttgaaaaatctgatattgctttagcagctggggtcatggattgt |
1251315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 338 - 417
Target Start/End: Complemental strand, 1251477 - 1251400
Alignment:
| Q |
338 |
ttgatcacatgataaattccacttgcgagaaatttacctttttatattaaagtaattgttatatggtcctaattattgat |
417 |
Q |
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| T |
1251477 |
ttgatcacatgataaattccatttgcgagaaatttacctttttatattaaagtaa--gttatatggtcctaattattgat |
1251400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 1242439 - 1242577
Alignment:
| Q |
109 |
agagattgttcaattctaatgccacagttttaacatttcaagcataatacaaatcaggatatgaagttctgaaatgtgcagattgataatcaaagctgag |
208 |
Q |
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| T |
1242439 |
agagattgttcaattgcaatgccacagttttaacatgtcaagtatggtacaa-tcggaatttgaagttctgaaatgtgcagaataataattagagctgag |
1242537 |
T |
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| Q |
209 |
tcatatattggat-----aaaagataaatttcttcaatta |
243 |
Q |
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| T |
1242538 |
tcatctattggatatataaaaagataaatttctccaatta |
1242577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 44899382 - 44899206
Alignment:
| Q |
62 |
gctttgatatgtgagaaagtgttttatcagaaattgaagtttgt----aaaagagattgttcaattctaatgccacagttttaacatttcaagcataata |
157 |
Q |
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|||||||| |||||| |||||||| ||||||||||||||| ||| || | |||||| |||||| |||||||||||||||||||| ||||||||| || |
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| T |
44899382 |
gctttgatctgtgagcaagtgtttcatcagaaattgaagtgtgtgacaaagatagattgctcaattttaatgccacagttttaacatgtcaagcatatta |
44899283 |
T |
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| Q |
158 |
caaatcaggatatgaagttctgaaatgtgcagattgataatcaaagctgagtcatatattggat-aaaagataaatttctt |
237 |
Q |
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| | |||| || ||||||||||||||||| ||| ||||| | ||| ||||||| || ||||| ||||||||| |||||| |
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| T |
44899282 |
c-agtcagaatttgaagttctgaaatgtggaga---ataattagagcagagtcatctactggataaaaagataagtttctt |
44899206 |
T |
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