View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_25 (Length: 480)
Name: NF6641_high_25
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 9 - 462
Target Start/End: Complemental strand, 19846174 - 19845721
Alignment:
| Q |
9 |
caagaaaattgaaaaacagattttatataatagaacaaaccaaaacagaacagtagaattatatgataaaaaaccaagaccggtacctgcttctccataa |
108 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19846174 |
caagaaaattgaaaaacagattttatataattgatcaaaccaaaacagaacagtagaattatatgataaaaaaccaagaccggtacctgcttctccataa |
19846075 |
T |
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| Q |
109 |
gcatagtgacagtcatccccaatgggacacagcttaatcttccagtaagtgccccttgctggcttgttcacagacctatttccttccaaattattagaac |
208 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19846074 |
gcgtagtgacagtcatccccaatgggacacagcttaatcttccagtaagtgccccttgctggcttgttcacagacctatttccttccaaattattagaac |
19845975 |
T |
|
| Q |
209 |
catctccgatacttccaatgcttaatgcacaggcctctcttgacttccaagaatcgtccctaagcctatgaagaaaaatacacgtatcaccataaggaca |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19845974 |
catctccgatacttccaatgcttaatgcacaggcctctcttgatttccaagaatcttccctaagcctatgaagaaaaatacatgtatcaccataaggaca |
19845875 |
T |
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| Q |
309 |
ttcctcaccattgtagtatttcttgcatagccccatcttgtgaatgattttctcatcatcatccagaaactgcatccattcctcattgcgaggaccagct |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19845874 |
ttcctcaccattgtagtatttcttgcatagccccatcttgtgaatgattttctcatcatcatccagaaactgcatccattcctcattgcgaggaccagct |
19845775 |
T |
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| Q |
409 |
agatccttccaattcaccggtggctgcctaatctcaccaaccccgtgagcatag |
462 |
Q |
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| T |
19845774 |
agatccttccaattcgccggtggctgcctaatctcaccaaccccgtgagcatag |
19845721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 141 - 462
Target Start/End: Original strand, 22691745 - 22692072
Alignment:
| Q |
141 |
cttaatcttccagtaagtgccccttgctggcttgttcacagacctatttccttccaaattattagaa------ccatctccgatacttccaatgcttaat |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
22691745 |
cttaatcttccagtaagtgccccttgctggcttgttcacagacctattgccttccaaactattagaattggaaccatctccgatacttccaatgcttaat |
22691844 |
T |
|
| Q |
235 |
gcacaggcctctcttgacttccaagaatcgtccctaagcctatgaagaaaaatacacgtatcaccataaggacattcctcaccattgtagtatttcttgc |
334 |
Q |
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| T |
22691845 |
gcacaggcctctcttgatttccaagaatcatccctaagcctatgaagaaaactacacttatcatcataaggacattctttaccattgtagtatttcttgc |
22691944 |
T |
|
| Q |
335 |
atagccccatcttgtgaatgattttctcatcatcatccagaaactgcatccattcctcattgcgaggaccagctagatccttccaattcaccggtggctg |
434 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| |||||||| ||||||| |||| ||||||||| |
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| T |
22691945 |
atagccccatcttgtgaatgattttttgatcatcatccagaaactgcatccattcctcgttgcgagcgccagctagctccttccgattcggcggtggctg |
22692044 |
T |
|
| Q |
435 |
cctaatctcaccaaccccgtgagcatag |
462 |
Q |
| |
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||| |||||||||||||||||||||||| |
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| T |
22692045 |
ccttatctcaccaaccccgtgagcatag |
22692072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 22691623 - 22691698
Alignment:
| Q |
11 |
agaaaattgaaaaacagattttatataatagaa-caaaccaaaacagaacagtagaattatatgataaaaaaccaa |
85 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22691623 |
agaaaattgaaaaacagattttatataatttaaacaaaccaaaacaaaacagtagaattatatgataaaaaaccaa |
22691698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 372
Target Start/End: Complemental strand, 46899051 - 46898955
Alignment:
| Q |
276 |
atgaagaaaaatacacgtatcaccataaggacattcctcaccattgtagtatttcttgcatagccccatcttgtgaatgattttctcatcatcatcc |
372 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||| |||| || ||||| || ||| |||||||||||||||||| | ||| |||||| |
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|
| T |
46899051 |
atgaagaaagctacacttatcaccataaggacattcctcaccaatgtaatacttcttacacagcttcatcttgtgaatgattttttgatcttcatcc |
46898955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 46899223 - 46899146
Alignment:
| Q |
134 |
gacacagcttaatcttccagtaagtgccccttgctggcttgttcacagacctatttccttccaaattattagaaccat |
211 |
Q |
| |
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||||||||||| ||||||| |||| | |||||||||||||||||||| |||| | ||||||||||| |||||||||| |
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| T |
46899223 |
gacacagcttagtcttccaataagcactccttgctggcttgttcacagccctaatgccttccaaattgttagaaccat |
46899146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 46890619 - 46890548
Alignment:
| Q |
134 |
gacacagcttaatcttccagtaagtgccccttgctggcttgttcacagacctatttccttccaaattattag |
205 |
Q |
| |
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||||||||||| |||||| ||||||| ||||||| ||||||||| || ||| | |||||||||||||||| |
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| T |
46890619 |
gacacagcttagtcttccgataagtgctccttgcttgcttgttcaaagccctgctgccttccaaattattag |
46890548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 46864077 - 46864037
Alignment:
| Q |
146 |
tcttccagtaagtgccccttgctggcttgttcacagaccta |
186 |
Q |
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||||||| ||||||||||| |||||||||||||||| |||| |
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| T |
46864077 |
tcttccaataagtgcccctagctggcttgttcacagcccta |
46864037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 463
Target Start/End: Complemental strand, 46898916 - 46898840
Alignment:
| Q |
387 |
ttcctcattgcgaggaccagctagatccttccaattcaccggtggctgcctaatctcaccaaccccgtgagcatagt |
463 |
Q |
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|||||| ||||||||| || | || |||| ||||||| |||||||||||| |||||| || |||||||||| |||| |
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| T |
46898916 |
ttcctcgttgcgaggatcaaccagctcctgccaattccgcggtggctgccttatctcatcagccccgtgagcgtagt |
46898840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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