View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_28 (Length: 459)
Name: NF6641_high_28
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 18245136 - 18244694
Alignment:
| Q |
1 |
cattttcccatatgctacttctttccaacattgtgctcatggtggtagggttgagtatggtttagatgttttacctcacatgagtggtgagagagaagct |
100 |
Q |
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| T |
18245136 |
cattttccaatatgctacttctttccaacattgtgctcatggtggtagggttgagtatggtttaaatgttttacctcacatgagtggtgagagagaagct |
18245037 |
T |
|
| Q |
101 |
atgcaaggacccctacatgttggtttgtatgctcaacaagcaccttttgattacttctctggtgtgtgttgtttctctctaaatccttctcttttgttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18245036 |
atgcaaggacccctacatgttggtttgtatgctcaacaagcaccttttgattacttctctggtgtgtgttgtttctctctaaatccttctcttttgttta |
18244937 |
T |
|
| Q |
201 |
cttcatattcttgtaggagacaccatggttttcataaattgattttgtggtcacggttgttgttatgctgcgtattctttataagtgcattacaatattt |
300 |
Q |
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| T |
18244936 |
cttcatattcttgtaggagacaacatggttttcataaattgattttgtggtcgtggttgttgttaacatgcgtattctttataagtgcattacaatattt |
18244837 |
T |
|
| Q |
301 |
atgttcgcaatataacttcaaccgcgattgcaatttagaacagtgaaatttatcgagtagactagagacgaaaacctagnnnnnnnngggtgtaaattag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| || |
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| T |
18244836 |
atgttcgcaatataacttcaaccgcgattgcaatttagaacagtgaaatttatcgagtagactagagacgaaaacctagtttttttttgttgtaaatcag |
18244737 |
T |
|
| Q |
401 |
acatcctttgcgagcaactgcagagactaatccctcgagtatt |
443 |
Q |
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| T |
18244736 |
acatcctctgctagcaactgcggagactaatctctcaagtatt |
18244694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 443
Target Start/End: Complemental strand, 31113484 - 31113444
Alignment:
| Q |
403 |
atcctttgcgagcaactgcagagactaatccctcgagtatt |
443 |
Q |
| |
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| T |
31113484 |
atccttcgcgcgcaactgcggagactaatccctcgagtatt |
31113444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 438
Target Start/End: Complemental strand, 46864256 - 46864206
Alignment:
| Q |
388 |
gggtgtaaattagacatcctttgcgagcaactgcagagactaatccctcga |
438 |
Q |
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| T |
46864256 |
gggtgtaaatcaggtatcctttgcgcgcaactgcagagactaatccctcga |
46864206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 36821071 - 36821107
Alignment:
| Q |
403 |
atcctttgcgagcaactgcagagactaatccctcgag |
439 |
Q |
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||||| |||| |||||||||||||||||||||||||| |
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| T |
36821071 |
atcctctgcgcgcaactgcagagactaatccctcgag |
36821107 |
T |
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