View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_32 (Length: 443)
Name: NF6641_high_32
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_32 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 137 - 443
Target Start/End: Original strand, 1166621 - 1166931
Alignment:
| Q |
137 |
ccatagacaaacttgaagggtgtttcgtatgttgaggcttag----tgtgttctatgatattcccatagaaacgctgtttagttcgtcaactcattctcc |
232 |
Q |
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| T |
1166621 |
ccatagacaaacttgaagggtatttcgtatgttgaggcttagttagtgtgttctatgatattcccatagaaacgctgtttagttcgtcaactcattctcc |
1166720 |
T |
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| Q |
233 |
ttttgcttgatccactattttttggaaatttattaagaattatgttttttgctgattcgacctgcacgttcgtctattagattgcaaattgagctgatcn |
332 |
Q |
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| T |
1166721 |
ttttgcttgatccactattttttggaaatttattaagaattatgttttctgctgattcgacctgcacgttcgtctattagattgcaaattgagctgatct |
1166820 |
T |
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| Q |
333 |
nnnnnnnnnnnnnnnnnngatgattgtgtggggaagtccatgtcgcaaatgacatatttctgcacaaacttatgcatcctttaagtagtaatagtggata |
432 |
Q |
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| T |
1166821 |
atttttattttattttatgatgattgtgtggggaagtccatgtcgcaaatgacatatttctgcacaaacttatgcatccttttagtagtaatagtggata |
1166920 |
T |
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| Q |
433 |
aagcctcaact |
443 |
Q |
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| T |
1166921 |
aagcctcaact |
1166931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 1166492 - 1166565
Alignment:
| Q |
10 |
catcatcatcaactgagcaaaggttaatttcatgatcattggagttctcacaattcaatttctaaaattcttag |
83 |
Q |
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| T |
1166492 |
catcattatcaactgggcaaaggttaatttcatgatcattggagttctcacgattcaatttctaaaattcttag |
1166565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 16848588 - 16848661
Alignment:
| Q |
10 |
catcatcatcaactgagcaaaggttaatttcatgatcattggagttctcacaattcaatttctaaaattcttag |
83 |
Q |
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| T |
16848588 |
catcattatcaattgggcaaaggttaatttcatgatcattcgagttctcacgattcaatttctaaaattcttag |
16848661 |
T |
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