View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_36 (Length: 433)
Name: NF6641_high_36
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 4340683 - 4340282
Alignment:
| Q |
19 |
gaaagagttatgaatatctcttaaaatcacatatcattcttggagatcatttgtttttacacttactcctagaatgggaaatggtgttttgttttcttgg |
118 |
Q |
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| T |
4340683 |
gaaagagttatgaatatct--taaaatcacatatcattcttggagatcatttgtttttacacttactcctagaatgggaaatggtgttttgttttcttgt |
4340586 |
T |
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| Q |
119 |
gtgataggaacattgatcaagggtcaattcgaggatgtcgctcgacaataagctctctgaaaatatgaggatatcataaatggaaatgtgttgaaggcgt |
218 |
Q |
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| T |
4340585 |
gtgataggaacattgatcaagggtcaagttgaggatgtcgctccacaataagctctctaaaaatatgaggatatcataaatggaaatgtgttgaaggcgt |
4340486 |
T |
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| Q |
219 |
acaagaggatgtcaaacagttaacatcatcattaccttattattattggatcaacacaggagaccactccttgaaacattttcctagaagcaccaagaaa |
318 |
Q |
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| T |
4340485 |
acaagaggatgtcaaacagttaacatcatcattgccttattattattggatcaacacaggagaccactccttgaaacattttcctagaagcaccaagaaa |
4340386 |
T |
|
| Q |
319 |
aaaggagtaagttcttggtgaaaaaaggtcatgatgttctataatgagctaaactatgccttaactcattatgagaaggctattacttttcccaccctat |
418 |
Q |
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| T |
4340385 |
aaaggagtaagttcttggtgaaaaaaggtcatgatgttctataatgagctaaaatatgccttaactcattatgagaaggctattacttttcccaccctat |
4340286 |
T |
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| Q |
419 |
tcat |
422 |
Q |
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| T |
4340285 |
tcat |
4340282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 251
Target Start/End: Original strand, 8991718 - 8991866
Alignment:
| Q |
103 |
tgttttgttt-tcttgggtgataggaacattgatcaagggtcaattcgaggatgtcgctcgacaataagctctctgaaaatatgaggatatcataaatgg |
201 |
Q |
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|||||||||| ||||| || |||||||||||||| |||||| || | |||||| | ||| | ||||||||| | ||||||||||| ||||| | | |
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| T |
8991718 |
tgttttgtttctcttgtgttataggaacattgattaagggt-aagtaaaggatgacactccataataagctccttagaaatatgaggacatcatgagttt |
8991816 |
T |
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| Q |
202 |
aaatgtgttgaaggcgtacaagaggatgtcaaacagttaacatcatcatt |
251 |
Q |
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| T |
8991817 |
aagtgtgttgaaggcatacaagagaatgacaaacagtaaacctcatcatt |
8991866 |
T |
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