View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_high_37 (Length: 425)

Name: NF6641_high_37
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_high_37
NF6641_high_37
[»] chr5 (11 HSPs)
chr5 (15-180)||(25444465-25444630)
chr5 (364-410)||(25443949-25443995)
chr5 (34-133)||(7767496-7767594)
chr5 (34-129)||(27170583-27170677)
chr5 (57-133)||(21600764-21600839)
chr5 (58-134)||(27632523-27632599)
chr5 (283-317)||(25444306-25444340)
chr5 (57-134)||(6989404-6989480)
chr5 (57-134)||(1157688-1157764)
chr5 (328-369)||(25444233-25444274)
chr5 (59-139)||(36608191-36608271)
[»] chr3 (8 HSPs)
chr3 (15-140)||(14993509-14993633)
chr3 (15-134)||(27741609-27741727)
chr3 (75-139)||(25498541-25498605)
chr3 (58-135)||(17113969-17114046)
chr3 (34-107)||(43275506-43275578)
chr3 (58-139)||(51057130-51057212)
chr3 (102-139)||(38258551-38258588)
chr3 (39-131)||(893410-893501)
[»] chr4 (13 HSPs)
chr4 (21-114)||(6409558-6409650)
chr4 (15-139)||(19657883-19658006)
chr4 (62-138)||(14791926-14792002)
chr4 (34-134)||(14566447-14566546)
chr4 (57-134)||(34227461-34227537)
chr4 (25-85)||(54230270-54230330)
chr4 (39-85)||(26677297-26677343)
chr4 (58-139)||(50589257-50589339)
chr4 (57-139)||(28149600-28149683)
chr4 (89-139)||(23533066-23533116)
chr4 (57-131)||(47518922-47518995)
chr4 (21-70)||(24958109-24958158)
chr4 (75-139)||(12887986-12888050)
[»] chr2 (5 HSPs)
chr2 (46-130)||(3257982-3258066)
chr2 (34-134)||(17374870-17374968)
chr2 (58-139)||(1242413-1242495)
chr2 (57-130)||(3921172-3921244)
chr2 (57-129)||(1552060-1552131)
[»] scaffold0009 (1 HSPs)
scaffold0009 (47-138)||(54030-54121)
[»] chr6 (6 HSPs)
chr6 (34-135)||(3524021-3524121)
chr6 (39-134)||(21880978-21881072)
chr6 (15-105)||(22577375-22577465)
chr6 (34-139)||(34213847-34213951)
chr6 (75-139)||(22696247-22696311)
chr6 (73-139)||(11444779-11444846)
[»] chr1 (4 HSPs)
chr1 (58-139)||(32947223-32947304)
chr1 (42-135)||(39709466-39709558)
chr1 (34-134)||(34654493-34654592)
chr1 (82-134)||(34117648-34117700)
[»] scaffold0005 (2 HSPs)
scaffold0005 (62-138)||(47729-47805)
scaffold0005 (34-134)||(250829-250928)
[»] chr7 (11 HSPs)
chr7 (63-139)||(47588718-47588794)
chr7 (58-134)||(36933922-36933998)
chr7 (34-112)||(1778136-1778213)
chr7 (25-92)||(3958869-3958936)
chr7 (25-92)||(19289916-19289983)
chr7 (58-139)||(40074596-40074678)
chr7 (65-134)||(11698811-11698879)
chr7 (34-114)||(3301984-3302063)
chr7 (34-106)||(39020680-39020751)
chr7 (58-113)||(26199315-26199370)
chr7 (75-139)||(5893241-5893305)
[»] chr8 (6 HSPs)
chr8 (17-92)||(13995274-13995349)
chr8 (34-135)||(5994166-5994266)
chr8 (46-113)||(6443585-6443651)
chr8 (34-132)||(10408381-10408478)
chr8 (58-139)||(19554721-19554803)
chr8 (75-139)||(19411631-19411696)
[»] scaffold0015 (1 HSPs)
scaffold0015 (58-139)||(79516-79599)


Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 25444630 - 25444465
Alignment:
Q  15 caaaggcaaacctccgcacaacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattc 114  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25444630 caaaggaaaacctccgcacaacaacataaacaaaagttggatcaaaaccctcaaacatcatcgcaagctgctacaaaaacaacttccaccacctacattc 25444531  T
Q  115 tgctaatcgcacacaacccccaaaccggatatctacatggcggaggagtttgaatttgcggaggag 180  Q
     ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25444530 cgctgatcgcacacaacccccaaaccggatatctacatggtggaggagtttgaatttgcggaggag 25444465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 364 - 410
Target Start/End: Complemental strand, 25443995 - 25443949
Alignment:
Q  364 tccttctctctttccgccatgtcttccccaccggcaaccatgtctgt 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25443995 tccttctctctttccgccatgtcttccccaccggcaaccatgtctgt 25443949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 7767594 - 7767496
Alignment:
Q  34 aacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccc 133  Q
    |||| ||||||||||||||| | ||||| ||||||||||| || ||| |||| ||||||||||||||||||||| |||||  |||  |||||||||||||    
T  7767594 aacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaa-ctgccacaaaaacaacttccaccacccacatttcgctgctcgcacacaaccc 7767496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 27170677 - 27170583
Alignment:
Q  34 aacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacaca 129  Q
    |||| ||||||||||||||| | ||||| ||||||||||| |||||| |||| ||||||| ||||||||||||| ||||||  ||| |||||||||    
T  27170677 aacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcacaa-ctgccacaaaaataacttccaccacccacattccactactcgcacaca 27170583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 21600764 - 21600839
Alignment:
Q  57 caaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccc 133  Q
    ||||| ||||||||||| |||||| |||| |||||||||||||| |||||| |||||| |||  |||||||||||||    
T  21600764 caaaatcctcaaacatcgtcacaa-ctgccacaaaaacaacttctaccacccacattccgctgctcgcacacaaccc 21600839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 27632599 - 27632523
Alignment:
Q  58 aaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 134  Q
    ||||||||||| ||   ||||||||||| |||||||  ||||||||||||||||| |||||  ||||||||||||||    
T  27632599 aaaaccctcaaccaatgtcacaagctgccacaaaaattacttccaccacctacatcctgctgctcgcacacaacccc 27632523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 25444340 - 25444306
Alignment:
Q  283 aaaaacagctcattcttaattttatttgaaagaaa 317  Q
    |||||||||||||||||||||||||||||||||||    
T  25444340 aaaaacagctcattcttaattttatttgaaagaaa 25444306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 6989404 - 6989480
Alignment:
Q  57 caaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 134  Q
    ||||| |||||| |||| |||||| |||| |||||||||||||| |||||| |||||| |||  ||||||||||||||    
T  6989404 caaaatcctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattccgctgctcgcacacaacccc 6989480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 1157764 - 1157688
Alignment:
Q  57 caaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 134  Q
    ||||| |||||| |||| |||||| |||| |||||||||||||| |||||| |||||| |||  ||||||| ||||||    
T  1157764 caaaatcctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattccgctgctcgcacataacccc 1157688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 25444274 - 25444233
Alignment:
Q  328 acaaaatccactatctactattagttttcataattatccttc 369  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||    
T  25444274 acaaattccacgatctactattacttttcataattatccttc 25444233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 36608271 - 36608191
Alignment:
Q  59 aaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    |||||||||| || | ||||||||||  ||||||||||||| |||||| |||| || |||  |||| ||||||||| ||||    
T  36608271 aaaccctcaaccaacgtcacaagctgacacaaaaacaactttcaccacttacactccgctgctcgcgcacaacccctaaac 36608191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 14993509 - 14993633
Alignment:
Q  15 caaaggcaaacctccgcacaacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattc 114  Q
    ||||| ||||||||| ||||||| ||||||||||||||| | |||| ||||||||||||||||||||| |  |||||||||||||||||||  |||||||    
T  14993509 caaagacaaacctcctcacaacaacataaacaaaagttgtaccaaatccctcaaacatcatcacaagccgtcacaaaaacaacttccacca-ttacattc 14993607  T
Q  115 tgctaatcgcacacaacccccaaacc 140  Q
     |||  ||||||||||||||||||||    
T  14993608 cgctgctcgcacacaacccccaaacc 14993633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 27741727 - 27741609
Alignment:
Q  15 caaaggcaaacctccgcacaacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattc 114  Q
    ||||| ||||||||||||||||| ||||||||||||||| |  ||| |||||||||||||||||||| ||| ||||||||||| |||||||  |||||||    
T  27741727 caaagacaaacctccgcacaacaacataaacaaaagttgtactaaatccctcaaacatcatcacaagttgccacaaaaacaacatccacca-ttacattc 27741629  T
Q  115 tgctaatcgcacacaacccc 134  Q
     | |  ||||||||||||||    
T  27741628 cgttgctcgcacacaacccc 27741609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 25498541 - 25498605
Alignment:
Q  75 tcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  25498541 tcacaagctgccacaaaaacaacttccaccacctacattctgctgctcgcacacaacccccaaac 25498605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 17114046 - 17113969
Alignment:
Q  58 aaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccccc 135  Q
    |||| |||||| || | ||||||||||| |||||| |||||||||| |||||||||| |||  |||||||||||||||    
T  17114046 aaaaacctcaaccaacgtcacaagctgccacaaaagcaacttccactacctacattccgctgctcgcacacaaccccc 17113969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 43275506 - 43275578
Alignment:
Q  34 aacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacc 107  Q
    |||| ||||||||||||||| | ||||| ||||||||||  ||||||| ||| |||||||||||||||||||||    
T  43275506 aacaacataaacaaaagttgtaccaaaatcctcaaacattgtcacaag-tgccacaaaaacaacttccaccacc 43275578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 51057212 - 51057130
Alignment:
Q  58 aaaaccctcaaacatcatcacaagctgctacaaaaa-caacttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    |||||| |||| || ||||||||||| | ||||||| ||| ||||||||||| || ||||||  |||||| ||||||||||||    
T  51057212 aaaaccatcaaccaacatcacaagctaccacaaaaaacaatttccaccacctgcaatctgctgctcgcacgcaacccccaaac 51057130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 38258551 - 38258588
Alignment:
Q  102 accacctacattctgctaatcgcacacaacccccaaac 139  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  38258551 accacctacattccgctactcgcacacaacccccaaac 38258588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 893501 - 893410
Alignment:
Q  39 cataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaac 131  Q
    |||||| |||||||| | ||||| | | ||||||| |||||| |||| |  |||||||||||||||||| |||||| |||  |||||||||||    
T  893501 cataaataaaagttgtaccaaaatctttaaacatcgtcacaa-ctgccatcaaaacaacttccaccacccacattccgctgctcgcacacaac 893410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 6409558 - 6409650
Alignment:
Q  21 caaacctccgcacaacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattc 114  Q
    |||||||| |||||| | ||||||||||||||| | ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  6409558 caaacctctgcacaataacataaacaaaagttgcaccaaaatcctcaaacatcatcacaa-ctgccacaaaaacaacttccaccacctacattc 6409650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 19657883 - 19658006
Alignment:
Q  15 caaaggcaaacctccgcacaacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattc 114  Q
    ||||| ||||||||| ||||| | |||||| |||||||| | ||||  ||||||||||||||||||||||| |||||||||||||||| ||  |||||||    
T  19657883 caaagacaaacctccacacaataacataaagaaaagttgtaccaaattcctcaaacatcatcacaagctgccacaaaaacaacttcca-caattacattc 19657981  T
Q  115 tgctaatcgcacacaacccccaaac 139  Q
     |||  |||||||||||||||||||    
T  19657982 cgctgctcgcacacaacccccaaac 19658006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 14791926 - 14792002
Alignment:
Q  62 ccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaa 138  Q
    ||||||| || ||||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||| ||||||    
T  14791926 ccctcaaccaacatcacaagctgccacaaaaacaacttccaccacctacattccgctgctcgcacacaactcccaaa 14792002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 14566546 - 14566447
Alignment:
Q  34 aacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccc 133  Q
    |||| ||||||||||||||| | ||||| ||||||||||  |||||| | || ||| ||||||||||||||||| |||||| |||  |||||||||||||    
T  14566546 aacaacataaacaaaagttgtaccaaaatcctcaaacatagtcacaa-cagccacataaacaacttccaccaccaacattccgctgctcgcacacaaccc 14566448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 34227537 - 34227461
Alignment:
Q  57 caaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 134  Q
    ||||| |||||| |||| |||||| |||| |||||||||||||| |||||| ||||| ||||| ||||||||||||||    
T  34227537 caaaatcctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattttgctactcgcacacaacccc 34227461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 54230270 - 54230330
Alignment:
Q  25 cctccgcacaacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgc 85  Q
    ||||| ||||||| ||||||||||||||| || ||| || |||||||||||||||||||||    
T  54230270 cctccacacaacaacataaacaaaagttgtattaaatccttcaaacatcatcacaagctgc 54230330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 26677297 - 26677343
Alignment:
Q  39 cataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgc 85  Q
    ||||||||||||||| | |||| ||||||||||||||||||||||||    
T  26677297 cataaacaaaagttgtaccaaatccctcaaacatcatcacaagctgc 26677343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 50589257 - 50589339
Alignment:
Q  58 aaaaccctcaaacatcatcacaagctgctacaaaa-acaacttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    |||| |||||| || ||||||||||||| |||||| ||||||||||||||| ||| || |||  ||||||||||||| |||||    
T  50589257 aaaaacctcaaccaacatcacaagctgccacaaaaaacaacttccaccacccacaatccgctgctcgcacacaacccacaaac 50589339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 28149683 - 28149600
Alignment:
Q  57 caaaaccctcaaacatcatcacaagctgctacaaaaa-caacttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    |||||||||||  || ||||||||||||  ||||||| |||||||||||||||||| || | |  ||||||||||||| |||||    
T  28149683 caaaaccctcacccaacatcacaagctgtcacaaaaaacaacttccaccacctacaatcagttgctcgcacacaaccctcaaac 28149600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 23533066 - 23533116
Alignment:
Q  89 aaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    ||||||||||||||||||||||| | ||||  |||||||||||| ||||||    
T  23533066 aaaaacaacttccaccacctacaatatgctgctcgcacacaaccaccaaac 23533116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 47518995 - 47518922
Alignment:
Q  57 caaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaac 131  Q
    ||||| |||||| ||||  ||||| |||| |||||||||||||| |||||| ||||||||||  |||||||||||    
T  47518995 caaaaacctcaagcatcgccacaa-ctgccacaaaaacaacttctaccacccacattctgctgctcgcacacaac 47518922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 24958158 - 24958109
Alignment:
Q  21 caaacctccgcacaacagcataaacaaaagttggatcaaaaccctcaaac 70  Q
    ||||||||||||||| | ||||||||||||||| | ||||| ||||||||    
T  24958158 caaacctccgcacaataacataaacaaaagttgtaccaaaatcctcaaac 24958109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 12887986 - 12888050
Alignment:
Q  75 tcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    ||||||||| | ||||||||||||||| || ||||||||| | |  |||||||| ||||||||||    
T  12887986 tcacaagctaccacaaaaacaacttcctccccctacattccgttgctcgcacaccacccccaaac 12888050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 3258066 - 3257982
Alignment:
Q  46 aaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaa 130  Q
    |||||||| ||||||||| |||| || ||||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||    
T  3258066 aaaagttgtatcaaaaccatcaaccaacatcacaagctgccacaaaaacaacttccaccacctacattccgctgctcgcacacaa 3257982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 17374870 - 17374968
Alignment:
Q  34 aacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccc 133  Q
    |||| ||||||||||||||| | ||||| ||||||||||| | |||| |||| ||||||| ||||||||||||| |||||| |||  |||||||||||||    
T  17374870 aacaacataaacaaaagttgtaccaaaatcctcaaacatcgt-acaa-ctgccacaaaaataacttccaccacccacattccgctgctcgcacacaaccc 17374967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 1242413 - 1242495
Alignment:
Q  58 aaaaccctcaaacatcatcacaagctgctacaaaaac-aacttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    ||||||||||| || ||||||||||||| |||||||  |||||| |||||||||| |||| |  |||||||||||||||||||    
T  1242413 aaaaccctcaaccaacatcacaagctgccacaaaaaataacttcaaccacctacaatctgttgctcgcacacaacccccaaac 1242495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 3921172 - 3921244
Alignment:
Q  57 caaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaa 130  Q
    ||||| |||||| |||| |||||| |||| |||||||||||||| |||||| |||||| |||  ||||||||||    
T  3921172 caaaatcctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattccgctgctcgcacacaa 3921244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 1552131 - 1552060
Alignment:
Q  57 caaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacaca 129  Q
    ||||| |||||| |||| |||||| |||| |||||||||||||| |||||  ||||||||||  |||||||||    
T  1552131 caaaatcctcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacacacattctgctgctcgcacaca 1552060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 54030 - 54121
Alignment:
Q  47 aaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaa 138  Q
    ||||||| | ||||||||||||||||||||||||||||  | |||||||||||||||||||||||||  |||  ||||||| ||||||||||    
T  54030 aaagttgtaccaaaaccctcaaacatcatcacaagctgacagaaaaacaacttccaccacctacatttcgctgctcgcacataacccccaaa 54121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 3524121 - 3524021
Alignment:
Q  34 aacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccc 133  Q
    |||| ||||||||||||||| | ||||| |||||||||||||||||| |||| ||||||||||||| || |||||||| ||||||  || ||||||||||    
T  3524121 aacaacataaacaaaagttgtaccaaaatcctcaaacatcatcacaa-ctgccacaaaaacaacttacatcacctacaatctgctgctcacacacaaccc 3524023  T
Q  134 cc 135  Q
    ||    
T  3524022 cc 3524021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 134
Target Start/End: Original strand, 21880978 - 21881072
Alignment:
Q  39 cataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 134  Q
    ||||||||||||||| | ||||| ||||||||||| |||||| |||| ||||||| ||||||||||||| |||||| |||  ||||||||||||||    
T  21880978 cataaacaaaagttgtaccaaaatcctcaaacatcgtcacaa-ctgccacaaaaataacttccaccacccacattccgctgctcgcacacaacccc 21881072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 22577375 - 22577465
Alignment:
Q  15 caaaggcaaacctccgcacaacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccacca 105  Q
    ||||| |||||||| |||||||| | |||||||| |||| | |||| ||||||||||||||||||||| || |||||||||||||| ||||    
T  22577375 caaagacaaacctctgcacaacaacgtaaacaaaggttgtaccaaatccctcaaacatcatcacaagcagccacaaaaacaacttcgacca 22577465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 34213951 - 34213847
Alignment:
Q  34 aacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccc 133  Q
    |||| ||||||||||||||| | ||||| || |||||||| ||| | ||||| ||||||||||||| ||||||| ||||| ||||  | |||||||||||    
T  34213951 aacaacataaacaaaagttgtaccaaaatccccaaacatcctcata-gctgccacaaaaacaactttcaccacccacattttgctgcttgcacacaaccc 34213853  T
Q  134 ccaaac 139  Q
    ||||||    
T  34213852 ccaaac 34213847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 22696247 - 22696311
Alignment:
Q  75 tcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    ||||||| ||| | ||||||||||||||||||||||||| || |  |||||||||||||||||||    
T  22696247 tcacaagttgccaaaaaaacaacttccaccacctacattttgttgctcgcacacaacccccaaac 22696311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 11444846 - 11444779
Alignment:
Q  73 catcacaagctgctaca-aaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    ||||||||| ||| ||| ||||||||||||||||||||| |||  ||  |||||||||||||||||||    
T  11444846 catcacaagttgccacataaaacaacttccaccacctacgttcgactgctcgcacacaacccccaaac 11444779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 32947304 - 32947223
Alignment:
Q  58 aaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    ||||||||||| || | ||||||||||||||||||||||||||||||| |||||| | |||  |||||||||||||||||||    
T  32947304 aaaaccctcaaccaacgtcacaagctgctacaaaaacaacttccaccatctacatcccgctgctcgcacacaacccccaaac 32947223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 135
Target Start/End: Complemental strand, 39709558 - 39709466
Alignment:
Q  42 aaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccccc 135  Q
    |||||||||||| | ||||| |||||||||||  ||||| |||| ||||||||||||| ||||||| ||||||||||  |||||||||||||||    
T  39709558 aaacaaaagttgtaccaaaatcctcaaacatcgccacaa-ctgccacaaaaacaactttcaccacccacattctgctgctcgcacacaaccccc 39709466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 34654493 - 34654592
Alignment:
Q  34 aacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccc 133  Q
    |||| ||||||||||||||| | ||||| ||||||||||| || ||| |||  ||||||||||||||||||||| |||||| |||  |||||||||||||    
T  34654493 aacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaa-ctgtcacaaaaacaacttccaccacccacattccgctgctcgcacacaaccc 34654591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 34117648 - 34117700
Alignment:
Q  82 ctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 134  Q
    |||| ||||||||||||||||||||| |||||| |||  ||||||||||||||    
T  34117648 ctgccacaaaaacaacttccaccacccacattccgctgctcgcacacaacccc 34117700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 47805 - 47729
Alignment:
Q  62 ccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaa 138  Q
    ||||||| || ||||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||| ||||||    
T  47805 ccctcaaccaacatcacaagctgccacaaaaacaacttccaccacctacattccgctgctcgcacacaactcccaaa 47729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 250829 - 250928
Alignment:
Q  34 aacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccc 133  Q
    |||| ||||||||||||||| | ||||| ||||||||||  |||||| | || ||| ||||||||||||||||| |||||| |||  |||||||||||||    
T  250829 aacaacataaacaaaagttgtaccaaaatcctcaaacatagtcacaa-cagccacataaacaacttccaccaccaacattccgctgctcgcacacaaccc 250927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 47588718 - 47588794
Alignment:
Q  63 cctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||| ||| |||||    
T  47588718 cctcaaccaacatcacaagctgccacaaaaacaacttccaccacctacattctgctgctcgcacacagcccacaaac 47588794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 36933922 - 36933998
Alignment:
Q  58 aaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 134  Q
    ||||||||||| || ||||||||||||| ||| ||||||||||||||||||||||||  ||  ||||||||||||||    
T  36933922 aaaaccctcaaccaacatcacaagctgccacagaaacaacttccaccacctacattcaactgctcgcacacaacccc 36933998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 1778136 - 1778213
Alignment:
Q  34 aacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacat 112  Q
    |||| ||||||||||||||| | ||||| ||||||||||  |||||| |||| ||||||||||||||||||||||||||    
T  1778136 aacaacataaacaaaagttgtaccaaaatcctcaaacattgtcacaa-ctgccacaaaaacaacttccaccacctacat 1778213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 3958936 - 3958869
Alignment:
Q  25 cctccgcacaacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaa 92  Q
    ||||||||||||| ||||||||||||||| | |||| |||||||| ||| ||||||||||| ||||||    
T  3958936 cctccgcacaacaacataaacaaaagttgcaccaaatccctcaaatatcgtcacaagctgccacaaaa 3958869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 19289916 - 19289983
Alignment:
Q  25 cctccgcacaacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaa 92  Q
    ||||||||||||| ||||||||||||||| | || | |||||||||||||||||||| ||| ||||||    
T  19289916 cctccgcacaacaacataaacaaaagttgtaccagatccctcaaacatcatcacaagttgccacaaaa 19289983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 40074678 - 40074596
Alignment:
Q  58 aaaaccctcaaacatcatcacaagctgctacaaaaa-caacttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    ||||||||||| || ||||||||||||| ||||||| |||||||||||| | ||| || |||  |||||||||||||||||||    
T  40074678 aaaaccctcaaccaacatcacaagctgccacaaaaaacaacttccaccaacaacaatccgctgctcgcacacaacccccaaac 40074596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 11698879 - 11698811
Alignment:
Q  65 tcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccc 134  Q
    |||| |||| |||||| |||| |||||||||||||| |||||| ||||||||||  ||||||||||||||    
T  11698879 tcaagcatcgtcacaa-ctgccacaaaaacaacttctaccacccacattctgctgctcgcacacaacccc 11698811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 3301984 - 3302063
Alignment:
Q  34 aacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattc 114  Q
    |||| |||||||| |||||| | ||||| ||||||||||  |||||| |||| ||||||| ||||||||||||| ||||||    
T  3301984 aacaacataaacataagttgtaccaaaatcctcaaacatggtcacaa-ctgccacaaaaataacttccaccacccacattc 3302063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 39020751 - 39020680
Alignment:
Q  34 aacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccac 106  Q
    |||| |||||||||||||||   ||||| ||||||||||  |||||| |||| ||||||||||||||||||||    
T  39020751 aacaacataaacaaaagttgttacaaaatcctcaaacattgtcacaa-ctgccacaaaaacaacttccaccac 39020680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 26199315 - 26199370
Alignment:
Q  58 aaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacatt 113  Q
    |||| |||||| || | ||||||||||| ||| |||||||||||||||||||||||    
T  26199315 aaaaacctcaaccaacgtcacaagctgccacacaaacaacttccaccacctacatt 26199370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 5893305 - 5893241
Alignment:
Q  75 tcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    ||||||| ||| ||||||| |||||||||| ||||||||| |||  |||||  ||||||||||||    
T  5893305 tcacaagttgccacaaaaataacttccaccgcctacattccgctgctcgcattcaacccccaaac 5893241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 13995349 - 13995274
Alignment:
Q  17 aaggcaaacctccgcacaacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaa 92  Q
    |||||||||| |||||||||| ||||||||||||||| | |||| |||||||||||  ||||||||||| ||||||    
T  13995349 aaggcaaaccaccgcacaacaacataaacaaaagttgtaccaaatccctcaaacattctcacaagctgccacaaaa 13995274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 135
Target Start/End: Original strand, 5994166 - 5994266
Alignment:
Q  34 aacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaaccc 133  Q
    |||| |||||||||||| || | ||||| ||||||||||| |||||| || | ||||||||||||||||||||||| ||||||||  |||| ||||| ||    
T  5994166 aacaacataaacaaaagatgtaccaaaatcctcaaacatcgtcacaa-ctaccacaaaaacaacttccaccacctagattctgctgctcgcgcacaatcc 5994264  T
Q  134 cc 135  Q
    ||    
T  5994265 cc 5994266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 6443585 - 6443651
Alignment:
Q  46 aaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacatt 113  Q
    |||||||| | ||||| |||||||||||||||||| |||| |||||||||||||||||||| ||||||    
T  6443585 aaaagttgtaccaaaatcctcaaacatcatcacaa-ctgccacaaaaacaacttccaccacgtacatt 6443651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 10408381 - 10408478
Alignment:
Q  34 aacagcataaacaaaagttggatcaaaaccctcaaacatcatcacaagctgctacaaaaacaacttccaccacctacattctgctaatcgcacacaacc 132  Q
    |||| ||||||||||||||| | | |||  |||||||||| || ||| |||| |||||||||||||||||| ||||||||| |||  ||||||||||||    
T  10408381 aacaacataaacaaaagttgtaccgaaattctcaaacatcgtcgcaa-ctgccacaaaaacaacttccaccgcctacattccgctgctcgcacacaacc 10408478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 19554721 - 19554803
Alignment:
Q  58 aaaaccctcaaacatcatcacaagctgctacaaaaacaa-cttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    |||| |||||| || ||||||||||||| ||||||| || |||||||||| ||||||| | |  |||||||||||||||||||    
T  19554721 aaaaacctcaaccaacatcacaagctgccacaaaaaaaaacttccaccacttacattccggtgctcgcacacaacccccaaac 19554803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 19411696 - 19411631
Alignment:
Q  75 tcacaagctgctac-aaaaacaacttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    ||||||||||| || ||||| |||||||||||||||| ||| | |  |||||||||||||||||||    
T  19411696 tcacaagctgccaccaaaaaaaacttccaccacctacgttccggtgctcgcacacaacccccaaac 19411631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 79599 - 79516
Alignment:
Q  58 aaaaccctcaaacatcatcacaagctgctacaaaaa--caacttccaccacctacattctgctaatcgcacacaacccccaaac 139  Q
    |||||| |||| || ||||||||||||| |||||||  ||||||||||| |||| | || |||  |||||||||||||||||||    
T  79599 aaaaccatcaaccagcatcacaagctgccacaaaaaaacaacttccaccgcctataatccgctgctcgcacacaacccccaaac 79516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University