View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_38 (Length: 417)
Name: NF6641_high_38
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 168 - 400
Target Start/End: Complemental strand, 55070136 - 55069904
Alignment:
| Q |
168 |
ccacagcaactaatctcagatacactacaaacttaatattaatatagtttcttagcagaaaagaatatcatgtcatatgcaaagtaaaagagaaaaagat |
267 |
Q |
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| T |
55070136 |
ccacagcaactaatcccagatacactacaaacttaatattaatatagtttctaagcagaaaagaatatcatgtcatatgcaaagtaaaagagaaaaagat |
55070037 |
T |
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| Q |
268 |
atgatatattcttacgtatataggttaatgtgttcctcaggggtgaaattaggttcgggtaaaccttcaagaatgttgaggagtttggtgatacctttct |
367 |
Q |
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| T |
55070036 |
atgatatattcttacgtatataggttaatgtgttcctcaggagtgaaattaggttcgggtaaaccttcaagaatgttgaggagtttggtgatacctttct |
55069937 |
T |
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| Q |
368 |
gcatagtctcctatccttcttctaagttgataa |
400 |
Q |
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| T |
55069936 |
gaatagtctccaatccttcttctaagttgataa |
55069904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 55070289 - 55070194
Alignment:
| Q |
15 |
tattgagtttggtggatattgggtctaacacatccttaaaaaaccggcgtaaagattgatagtctttataaactctttcaggccttatctttatcc |
110 |
Q |
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| T |
55070289 |
tattgagtttggtggatattgggtctaacacatccttacaaaaccggcgtaaagattgatagtctttataaactctttcaggccttatctttatcc |
55070194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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