View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_high_47 (Length: 401)

Name: NF6641_high_47
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_high_47
NF6641_high_47
[»] chr8 (14 HSPs)
chr8 (19-401)||(40904592-40904978)
chr8 (23-76)||(5962857-5962910)
chr8 (19-75)||(34873147-34873203)
chr8 (19-79)||(36035128-36035188)
chr8 (23-76)||(44615745-44615798)
chr8 (23-79)||(44053389-44053445)
chr8 (23-77)||(31024359-31024413)
chr8 (35-76)||(31211413-31211454)
chr8 (23-79)||(37708756-37708812)
chr8 (23-70)||(33810705-33810752)
chr8 (25-76)||(36359033-36359084)
chr8 (19-73)||(41458356-41458409)
chr8 (23-76)||(5328519-5328572)
chr8 (23-76)||(26217856-26217909)
[»] chr6 (11 HSPs)
chr6 (23-79)||(18904330-18904386)
chr6 (25-79)||(3709926-3709980)
chr6 (25-79)||(32621531-32621585)
chr6 (25-77)||(13656333-13656385)
chr6 (21-72)||(30064326-30064375)
chr6 (25-76)||(32212346-32212397)
chr6 (25-75)||(32141989-32142039)
chr6 (19-75)||(5694975-5695030)
chr6 (19-79)||(24129371-24129431)
chr6 (24-76)||(31803547-31803599)
chr6 (32-76)||(32813602-32813646)
[»] chr4 (17 HSPs)
chr4 (23-79)||(28715755-28715811)
chr4 (23-79)||(30305864-30305920)
chr4 (32-76)||(1817232-1817276)
chr4 (23-79)||(36099132-36099188)
chr4 (23-78)||(3161087-3161142)
chr4 (34-76)||(35851655-35851697)
chr4 (319-401)||(17118220-17118303)
chr4 (30-76)||(3039161-3039207)
chr4 (26-60)||(46933419-46933453)
chr4 (19-77)||(47929306-47929364)
chr4 (23-76)||(13264226-13264279)
chr4 (23-76)||(21935542-21935595)
chr4 (163-212)||(29848365-29848414)
chr4 (23-76)||(42395292-42395345)
chr4 (35-79)||(23142702-23142746)
chr4 (35-79)||(23176671-23176715)
chr4 (32-76)||(55521415-55521459)
[»] chr3 (15 HSPs)
chr3 (23-79)||(41710648-41710704)
chr3 (26-76)||(32023482-32023532)
chr3 (23-79)||(15085633-15085689)
chr3 (23-79)||(27329881-27329937)
chr3 (23-79)||(51879160-51879216)
chr3 (25-75)||(8488494-8488544)
chr3 (23-76)||(25883940-25883993)
chr3 (32-76)||(16231844-16231888)
chr3 (163-255)||(24310515-24310607)
chr3 (23-79)||(44625174-44625230)
chr3 (23-79)||(46767408-46767464)
chr3 (19-70)||(5641572-5641623)
chr3 (32-79)||(36472380-36472427)
chr3 (22-76)||(40739163-40739217)
chr3 (26-79)||(41253698-41253751)
[»] chr1 (13 HSPs)
chr1 (23-79)||(18512524-18512580)
chr1 (24-79)||(11344504-11344559)
chr1 (24-79)||(11502524-11502579)
chr1 (19-77)||(21247695-21247753)
chr1 (23-79)||(10052420-10052476)
chr1 (23-79)||(18911916-18911972)
chr1 (23-70)||(3229672-3229719)
chr1 (19-58)||(8780829-8780868)
chr1 (23-75)||(13763826-13763878)
chr1 (32-76)||(24114159-24114203)
chr1 (32-64)||(24983510-24983542)
chr1 (24-76)||(26909823-26909874)
chr1 (26-70)||(27094287-27094331)
[»] chr5 (13 HSPs)
chr5 (25-75)||(39799983-39800033)
chr5 (23-79)||(3741019-3741075)
chr5 (25-75)||(6734692-6734742)
chr5 (21-62)||(27545117-27545158)
chr5 (23-79)||(3821370-3821426)
chr5 (19-71)||(4418299-4418351)
chr5 (23-79)||(23937882-23937938)
chr5 (25-76)||(6167279-6167330)
chr5 (26-76)||(885110-885160)
chr5 (19-76)||(15241457-15241514)
chr5 (23-60)||(16720574-16720611)
chr5 (19-76)||(32226197-32226254)
chr5 (32-76)||(33372954-33372998)
[»] chr7 (8 HSPs)
chr7 (26-79)||(33590516-33590569)
chr7 (21-71)||(36803385-36803435)
chr7 (23-79)||(13702090-13702146)
chr7 (23-79)||(46758307-46758363)
chr7 (32-79)||(40200790-40200837)
chr7 (24-78)||(47440760-47440814)
chr7 (25-70)||(5658553-5658598)
chr7 (23-79)||(46645774-46645830)
[»] chr2 (17 HSPs)
chr2 (26-79)||(15939357-15939410)
chr2 (23-79)||(5947931-5947987)
chr2 (19-71)||(11265075-11265127)
chr2 (23-79)||(20497144-20497200)
chr2 (19-70)||(44033288-44033339)
chr2 (25-71)||(18254656-18254702)
chr2 (30-76)||(25622211-25622257)
chr2 (42-76)||(36449077-36449111)
chr2 (22-75)||(7717558-7717611)
chr2 (19-60)||(25067275-25067316)
chr2 (23-76)||(32854597-32854650)
chr2 (19-79)||(14518345-14518405)
chr2 (23-59)||(17777132-17777168)
chr2 (23-79)||(23984172-23984228)
chr2 (22-54)||(34459285-34459317)
chr2 (32-76)||(39635374-39635418)
chr2 (163-227)||(41185022-41185086)
[»] scaffold1625 (1 HSPs)
scaffold1625 (165-230)||(527-592)


Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 40904592 - 40904978
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctgnnnnnnnn---tgtagaagtaactctttgctttaaatgt 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||           ||||||||||||||||||||||||||||    
T  40904592 acctcggacacctcacttctccacatttaaaatgtgcgagcttcagccactagactatctgacaaaaaaaaatgtagaagtaactctttgctttaaatgt 40904691  T
Q  116 aatcaaaatcaaaccaaaagctttaccaaatcaacaagaggactttctcttgattacaaaa-aataacttgattatgctgcttccaaataatccacaagc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40904692 aatcaaaatcaaaccaaaagctttaccaaatcaacaagaggactttctcttgattacaaaaaaataacttgattatgctgcttccaaataatccacaagc 40904791  T
Q  215 aactcatccatatcaaataaagatactcattcacttttttcacatgagaaatttaatttataaaataagaaacattagtggattgttgtttgacaaagca 314  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40904792 aactgatccatatcaaataaagatactcattcacttttttcccatgagaaatttaatttataaaataagtaacattagtggattgttgtttgacaaagca 40904891  T
Q  315 tagctaagagaaagcattcgatcataacttacagatacatgtcaatcaaaaacaaatgtttaaatattttatttatgatacatcctt 401  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40904892 tagctaagagaaaacattcgatcataacttacggatacatgtcaatcaaaaacaaatgtttaaatgttttatttatgatacatcctt 40904978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 5962857 - 5962910
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||||||||||    
T  5962857 cggacacctcatttcttcacatttaaaatgtgtgagtttcagccactagactac 5962910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 34873147 - 34873203
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagacta 75  Q
    |||||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||    
T  34873147 acctcggacaccccacttctccacatttaaaatgtgtgagctccagccactagacta 34873203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 36035188 - 36035128
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||||||| ||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  36035188 acctcggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctacctg 36035128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 44615745 - 44615798
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||    
T  44615745 cggacacctcatttcttcacatttaaaatgtgtgagtttcagccactaaactac 44615798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 44053445 - 44053389
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| ||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  44053445 cggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctacctg 44053389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 31024359 - 31024413
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacc 77  Q
    |||||||| ||||||| ||||||||||||||| ||||| |||||||||| |||||    
T  31024359 cggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctacc 31024413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 31211413 - 31211454
Alignment:
Q  35 ttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  31211413 ttcttcacatttaaaatgtgcgagcttcagccattaggctac 31211454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 37708756 - 37708812
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||| | ||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  37708756 cggacatcccacttctccacatttaaaatgtgtgagctccagccactaggctacctg 37708812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 33810705 - 33810752
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccacta 70  Q
    |||||||| ||||||| ||||||||||||||| ||||| |||||||||    
T  33810705 cggacaccccacttctccacatttaaaatgtgtgagctccagccacta 33810752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 36359033 - 36359084
Alignment:
Q  25 gacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||| ||||||||||| ||||||||||| |||||  ||||||||||||||    
T  36359033 gacaccgcacttcttcacctttaaaatgtgtgagctctagccactagactac 36359084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 41458356 - 41458409
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagac 73  Q
    |||||||||||  ||||||| |||||||||| |||| ||||||||||||||||||    
T  41458356 acctcggacactccacttctccacatttaaa-tgtgtgagcttcagccactagac 41458409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 5328572 - 5328519
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||||||||||||| |||| |||||||||| |||||  ||||||||| ||||    
T  5328572 cggacacctcacttctccacaattaaaatgtgtgagctctagccactaggctac 5328519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 26217856 - 26217909
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||||||||||||| ||||||||||||||| || || || |||||| |||||    
T  26217856 cggacacctcacttctccacatttaaaatgtgtgatctccaaccactaaactac 26217909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 18904330 - 18904386
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||    
T  18904330 cggacaccccacttctccacatttaaaatgtgtgagctccagccactagactacctg 18904386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 3709926 - 3709980
Alignment:
Q  25 gacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||| ||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  3709926 gacaccccacttctccacatttaaaatgtgagagctccagccactaggctacctg 3709980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 32621585 - 32621531
Alignment:
Q  25 gacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||| ||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  32621585 gacaccccacttctccacatttaaaatgtgtgagctccagccactaggctacctg 32621531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 13656333 - 13656385
Alignment:
Q  25 gacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacc 77  Q
    |||||| |||||||||||||| ||||||||||| ||||| ||| |||||||||    
T  13656333 gacaccccacttcttcacattaaaaatgtgcgaacttcaaccattagactacc 13656385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 30064326 - 30064375
Alignment:
Q  21 ctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactaga 72  Q
    ||||||||||||| |||||||||||||||||||  ||| |||||||||||||    
T  30064326 ctcggacacctcatttcttcacatttaaaatgt--gagtttcagccactaga 30064375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 32212397 - 32212346
Alignment:
Q  25 gacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||| |||||||||||||||||||| |||||| | | |||||||||||||    
T  32212397 gacaccccacttcttcacatttaaaatatgcgagttcctgccactagactac 32212346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 32142039 - 32141989
Alignment:
Q  25 gacacctcacttcttcacatttaaaatgtgcgagcttcagccactagacta 75  Q
    |||||| ||||| | ||||||||||||||| ||||| ||||||||||||||    
T  32142039 gacaccccacttttccacatttaaaatgtgtgagctccagccactagacta 32141989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 5694975 - 5695030
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagacta 75  Q
    |||||||||||| ||||||| |||| |||||||||| ||||| |||||| |||||||    
T  5694975 acctcggacaccccacttctccaca-ttaaaatgtgtgagctccagccattagacta 5695030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 24129371 - 24129431
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||| ||||| | ||||||| |||||| |||||||| |||||||||||| ||| |||||||    
T  24129371 accttggacatcccacttctccacattaaaaatgtgtgagcttcagccattaggctacctg 24129431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 31803599 - 31803547
Alignment:
Q  24 ggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    ||||||||||||||| |||| ||||| |||| |||||  ||||||||||||||    
T  31803599 ggacacctcacttctccacaattaaattgtgtgagctctagccactagactac 31803547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 32813646 - 32813602
Alignment:
Q  32 cacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||||||||| ||||| |||| ||||| |||||||||||||||    
T  32813646 cacttcttcacaattaaattgtgtgagctacagccactagactac 32813602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 28715755 - 28715811
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||  ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  28715755 cggacactccacttctccacatttaaaatgtgtgagcttcagccactagactacctg 28715811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 30305864 - 30305920
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  30305864 cggacacctcacttctccacatttaaaatgtgtgagctccagccactaggctacctg 30305920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 1817276 - 1817232
Alignment:
Q  32 cacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||    
T  1817276 cacttctccacatttaacatgtgcgagcttcagccactagactac 1817232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 36099188 - 36099132
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| ||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  36099188 cggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctacctg 36099132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 3161087 - 3161142
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacct 78  Q
    ||||||| |||||||| ||||||||||||||| ||||| ||||||||| |||||||    
T  3161087 cggacacttcacttctccacatttaaaatgtgtgagctacagccactaaactacct 3161142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 35851697 - 35851655
Alignment:
Q  34 cttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  35851697 cttctccacatttaaaatgtgcgagctccagccactagactac 35851655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 17118220 - 17118303
Alignment:
Q  319 taagagaaagcattcgatcataacttaca-gatacatgtcaatcaaaaacaaatgtttaaatattttatttatgatacatcctt 401  Q
    ||||| ||| ||| ||| ||||||||||| ||||||||  |||||||||||| | |||| || ||| |||||||||||||||||    
T  17118220 taagataaaacatccgaccataacttacatgatacatgaaaatcaaaaacaagtatttagatgtttcatttatgatacatcctt 17118303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 3039207 - 3039161
Alignment:
Q  30 ctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||||||||| |||||||||||| |||||||| |||||| |||||    
T  3039207 ctcacttcttcatatttaaaatgtgtgagcttcaaccactaaactac 3039161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 46933453 - 46933419
Alignment:
Q  26 acacctcacttcttcacatttaaaatgtgcgagct 60  Q
    ||||||||||||||||||||||||||||| |||||    
T  46933453 acacctcacttcttcacatttaaaatgtgtgagct 46933419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 47929306 - 47929364
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacc 77  Q
    |||||||| ||| ||||||| ||||||||||||||| |||||  ||||||||| |||||    
T  47929306 acctcggaaaccccacttctccacatttaaaatgtgtgagctctagccactaggctacc 47929364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 13264279 - 13264226
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||||| |||||||||||| ||||| |||| |||||  ||||||||||||||    
T  13264279 cggacaccccacttcttcacaattaaattgtgtgagctctagccactagactac 13264226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 21935542 - 21935595
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||||| ||||||| |||| ||||| |||| |||||| ||||||||||||||    
T  21935542 cggacaccccacttctccacaattaaattgtgtgagctttagccactagactac 21935595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 29848365 - 29848414
Alignment:
Q  163 tcttgattacaaaaaataacttgattatgctgcttccaaataatccacaa 212  Q
    ||||||||| ||||||||| ||||||| |  |||||||||||||||||||    
T  29848365 tcttgattataaaaaataagttgattacgtagcttccaaataatccacaa 29848414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 42395292 - 42395345
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||||| ||||||| |||| ||||| |||| |||||| ||||||||||||||    
T  42395292 cggacaccccacttctccacaattaaattgtgtgagctttagccactagactac 42395345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 23142746 - 23142702
Alignment:
Q  35 ttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||| ||||||||||||||| ||||| |||||||||| |||||||    
T  23142746 ttctccacatttaaaatgtgtgagctccagccactaggctacctg 23142702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 23176715 - 23176671
Alignment:
Q  35 ttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||| ||||||||||||||| ||||| |||||||||| |||||||    
T  23176715 ttctccacatttaaaatgtgtgagctccagccactaggctacctg 23176671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 55521459 - 55521415
Alignment:
Q  32 cacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||||||||||||||||||||  | |||||||||||| |||||    
T  55521459 cacttcttcacatttaaaatgtgtaaacttcagccactaaactac 55521415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 41710648 - 41710704
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  41710648 cggacacctcacttctccacatttaaaatgtgtgagctccagccactaggctacctg 41710704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 32023482 - 32023532
Alignment:
Q  26 acacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||||| |||||||||||||||||||| ||| |||||||||||||||||    
T  32023482 acacctcatttcttcacatttaaaatgtgtgagtttcagccactagactac 32023532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 15085689 - 15085633
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||||||||||| || |||||||||||| ||||| |||||||||| |||||||    
T  15085689 cggacacctcacttctccatatttaaaatgtgtgagctccagccactaggctacctg 15085633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 27329937 - 27329881
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| ||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  27329937 cggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctacctg 27329881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 51879160 - 51879216
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| ||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  51879160 cggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctacctg 51879216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 8488494 - 8488544
Alignment:
Q  25 gacacctcacttcttcacatttaaaatgtgcgagcttcagccactagacta 75  Q
    |||||||||||||| ||||||||||||||| ||||| |||| |||||||||    
T  8488494 gacacctcacttctccacatttaaaatgtgtgagctccagctactagacta 8488544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 25883993 - 25883940
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||||| ||||||| ||||||||||||||| ||||| |||||||||| ||||    
T  25883993 cggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctac 25883940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 16231888 - 16231844
Alignment:
Q  32 cacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    ||||||| || |||||||||||||||||| |||||||||||||||    
T  16231888 cacttctccatatttaaaatgtgcgagctccagccactagactac 16231844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 24310607 - 24310515
Alignment:
Q  163 tcttgattacaaaaaataacttgattatgctgcttccaaataatccacaagcaactcatccatatcaaataaagatactcattcacttttttc 255  Q
    |||||||||| ||||| ||| ||||||| | | || ||||| |||||||| ||| ||||||||||| ||| |||| ||||||| ||| |||||    
T  24310607 tcttgattaccaaaaacaacatgattataccgttttcaaatgatccacaaacaagtcatccatatcgaatgaagacactcatttactcttttc 24310515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 44625230 - 44625174
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| ||||||| ||||||||||||||| ||||| || ||||||| |||||||    
T  44625230 cggacaccccacttctccacatttaaaatgtgggagctccaaccactaggctacctg 44625174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 46767408 - 46767464
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||| | ||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  46767408 cggacatcccacttctccacatttaaaatgtgtgagctccagccactaggctacctg 46767464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 5641623 - 5641572
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccacta 70  Q
    ||||||||||||||||||||||||| ||||| |||| |||||  ||||||||    
T  5641623 acctcggacacctcacttcttcacaattaaattgtgtgagctctagccacta 5641572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 36472427 - 36472380
Alignment:
Q  32 cacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    ||||||| |||||| |||||||| ||||| ||||||||||||||||||    
T  36472427 cacttctccacattaaaaatgtgtgagctccagccactagactacctg 36472380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 40739217 - 40739163
Alignment:
Q  22 tcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    ||||||||||||||||| ||  ||||||||||| |||||  ||||||||||||||    
T  40739217 tcggacacctcacttctccatgtttaaaatgtgtgagctctagccactagactac 40739163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 41253751 - 41253698
Alignment:
Q  26 acacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    ||||||||||| | || |||||||||||| ||||| |||||||||| |||||||    
T  41253751 acacctcacttttccatatttaaaatgtgtgagctccagccactaggctacctg 41253698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 18512580 - 18512524
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||    
T  18512580 cggacaccccacttctccacatttaaaatgtgtgagctccagccactagactacctg 18512524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 11344504 - 11344559
Alignment:
Q  24 ggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    ||||||||||||||| |||||| || ||||| ||||||||||||||||| ||||||    
T  11344504 ggacacctcacttctccacattaaatatgtgtgagcttcagccactagattacctg 11344559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 11502524 - 11502579
Alignment:
Q  24 ggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    ||||||||||||||| |||||| || ||||| ||||||||||||||||| ||||||    
T  11502524 ggacacctcacttctccacattaaatatgtgtgagcttcagccactagattacctg 11502579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 21247753 - 21247695
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacc 77  Q
    |||||||||||| ||||||| || |||||||||||||||| |||  |||||||||||||    
T  21247753 acctcggacaccccacttctccatatttaaaatgtgcgagtttccaccactagactacc 21247695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 10052476 - 10052420
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| ||||||| |||||| || | ||||||||| ||||||||||||||||||    
T  10052476 cggacaccccacttctccacattaaatacgtgcgagctccagccactagactacctg 10052420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 18911916 - 18911972
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| |||| || ||||||||||||||| ||||| ||||||||| ||||||||    
T  18911916 cggacaccccactcctccacatttaaaatgtgtgagctccagccactaaactacctg 18911972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 3229719 - 3229672
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccacta 70  Q
    |||||| | |||||||| |||||||||||||| |||||||||||||||    
T  3229719 cggacatcccacttctttacatttaaaatgtgtgagcttcagccacta 3229672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 8780829 - 8780868
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgag 58  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  8780829 acctcggacaccccacttctccacatttaaaatgtgcgag 8780868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 13763826 - 13763878
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagacta 75  Q
    |||| ||| |||||||  |||||||||||||| ||||||||||||||| ||||    
T  13763826 cggataccccacttctctacatttaaaatgtgtgagcttcagccactaaacta 13763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 24114159 - 24114203
Alignment:
Q  32 cacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||||||||||||| ||||||||||||| |  |||||||||||    
T  24114159 cacttcttcacatttataatgtgcgagctttaatcactagactac 24114203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 24983510 - 24983542
Alignment:
Q  32 cacttcttcacatttaaaatgtgcgagcttcag 64  Q
    ||||| |||||||||||||||||||||||||||    
T  24983510 cactttttcacatttaaaatgtgcgagcttcag 24983542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 26909874 - 26909823
Alignment:
Q  24 ggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    ||||||| ||||||| |||||||||| |||| |||||||||||||||| ||||    
T  26909874 ggacaccccacttctccacatttaaa-tgtgtgagcttcagccactaggctac 26909823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 27094331 - 27094287
Alignment:
Q  26 acacctcacttcttcacatttaaaatgtgcgagcttcagccacta 70  Q
    |||||||||||||  |||||||||||||| |||||||| ||||||    
T  27094331 acacctcacttctctacatttaaaatgtgtgagcttcaaccacta 27094287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 39800033 - 39799983
Alignment:
Q  25 gacacctcacttcttcacatttaaaatgtgcgagcttcagccactagacta 75  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||||    
T  39800033 gacaccccacttctccacatttaaaatgtgtgagcttcagccactagacta 39799983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 3741019 - 3741075
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| ||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  3741019 cggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctacctg 3741075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 6734742 - 6734692
Alignment:
Q  25 gacacctcacttcttcacatttaaaatgtgcgagcttcagccactagacta 75  Q
    |||||| ||||||| ||||||||||||||| ||||| ||||||||||||||    
T  6734742 gacaccccacttctccacatttaaaatgtgtgagctccagccactagacta 6734692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 27545158 - 27545117
Alignment:
Q  21 ctcggacacctcacttcttcacatttaaaatgtgcgagcttc 62  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  27545158 ctcggacacctcacttcttcatatttaaaatgtgtgagcttc 27545117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 3821426 - 3821370
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||| ||| ||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  3821426 cggaaaccccacttctccacatttaaaatgtgtgagctccagccactaggctacctg 3821370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 4418351 - 4418299
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactag 71  Q
    ||||||||||||||| |||| ||||||||||||||| ||||| || |||||||    
T  4418351 acctcggacacctcatttctccacatttaaaatgtgtgagctccaaccactag 4418299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 23937938 - 23937882
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| |||| || ||||||||||||||| ||||| |||||||||| |||||||    
T  23937938 cggacaccccactcctccacatttaaaatgtgtgagctacagccactaggctacctg 23937882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 6167279 - 6167330
Alignment:
Q  25 gacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||||||||||| ||||||||||||||| |||||  ||||||||| ||||    
T  6167279 gacacctcacttctccacatttaaaatgtgtgagctctagccactaggctac 6167330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 885160 - 885110
Alignment:
Q  26 acacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    ||||||||||||| || |||||||||||| ||||| || ||||||||||||    
T  885160 acacctcacttctccatatttaaaatgtgtgagctccaaccactagactac 885110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 15241457 - 15241514
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||||||||| ||||||| |||| ||||| |||| |||||  ||||||||||||||    
T  15241457 acctcggacaccccacttctccacaattaaattgtgtgagctctagccactagactac 15241514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 16720611 - 16720574
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagct 60  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  16720611 cggacaccccacttcttcacatttaaaatatgcgagct 16720574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 32226254 - 32226197
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||||||||| ||||||| |||| ||||| | ||||||||| ||||||| ||||||    
T  32226254 acctcggacaccccacttctccacaattaaattatgcgagctttagccactggactac 32226197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 33372998 - 33372954
Alignment:
Q  32 cacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    ||||||| |||||||||||||||  |||| |||||||||||||||    
T  33372998 cacttctccacatttaaaatgtgtaagctccagccactagactac 33372954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 33590516 - 33590569
Alignment:
Q  26 acacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  33590516 acaccccacttctacacatttaaaatgtgcgagctccagccaccagactacctg 33590569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 36803385 - 36803435
Alignment:
Q  21 ctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactag 71  Q
    |||| ||||||||||||| |||||||||||||||||| |||||| ||||||    
T  36803385 ctcgaacacctcacttctccacatttaaaatgtgcgaccttcagacactag 36803435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 13702090 - 13702146
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| |||| || ||||||||||||||| ||||| |||||||||| |||||||    
T  13702090 cggacaccccactcctccacatttaaaatgtgtgagctccagccactaggctacctg 13702146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 46758307 - 46758363
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| |||| || ||||||||||||||| ||||| |||||||||| |||||||    
T  46758307 cggacaccccactcctccacatttaaaatgtgtgagctccagccactaggctacctg 46758363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 40200790 - 40200837
Alignment:
Q  32 cacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    ||||||| || |||||||||||| |||||||||||||||| |||||||    
T  40200790 cacttctccatatttaaaatgtgtgagcttcagccactaggctacctg 40200837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 47440814 - 47440760
Alignment:
Q  24 ggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacct 78  Q
    ||||||| ||||||| |||||| || ||||| ||||| |||||||||||||||||    
T  47440814 ggacaccccacttctccacattaaatatgtgtgagctccagccactagactacct 47440760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 5658598 - 5658553
Alignment:
Q  25 gacacctcacttcttcacatttaaaatgtgcgagcttcagccacta 70  Q
    |||||| ||||||| |||||||||||| || |||||||||||||||    
T  5658598 gacaccacacttctccacatttaaaatatgtgagcttcagccacta 5658553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 46645774 - 46645830
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| |||| || ||||||||||||||| ||||| ||| |||||| |||||||    
T  46645774 cggacaccccactcctccacatttaaaatgtgtgagctccagtcactaggctacctg 46645830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 15939357 - 15939410
Alignment:
Q  26 acacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    ||||| ||||||| ||||||||||||||| ||||| |||||||||| |||||||    
T  15939357 acaccccacttctccacatttaaaatgtgtgagctccagccactaggctacctg 15939410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 5947931 - 5947987
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| |||| || ||||||||||||||| ||||| |||||||||| |||||||    
T  5947931 cggacaccccactcctccacatttaaaatgtgtgagctccagccactaggctacctg 5947987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 11265127 - 11265075
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactag 71  Q
    |||||||||| ||||||| | ||| ||||||||||| ||||||||||||||||    
T  11265127 acctcggacatctcacttttccacgtttaaaatgtgtgagcttcagccactag 11265075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 20497200 - 20497144
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| ||||||| ||||||||||||||| ||||| ||||| |||| |||||||    
T  20497200 cggacaccccacttctccacatttaaaatgtgtgagctccagcctctaggctacctg 20497144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 44033288 - 44033339
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccacta 70  Q
    ||||||||||||||| |||| |||||||||| |||| ||||| |||||||||    
T  44033288 acctcggacacctcatttctccacatttaaagtgtgggagctccagccacta 44033339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 18254656 - 18254702
Alignment:
Q  25 gacacctcacttcttcacatttaaaatgtgcgagcttcagccactag 71  Q
    |||||| ||||||||||||||||||||||| ||||| || |||||||    
T  18254656 gacaccccacttcttcacatttaaaatgtgtgagctccaaccactag 18254702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 25622257 - 25622211
Alignment:
Q  30 ctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    ||||||||||||||||||||||||  ||||| ||| |||||||||||    
T  25622257 ctcacttcttcacatttaaaatgtatgagctccagtcactagactac 25622211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 36449111 - 36449077
Alignment:
Q  42 catttaaaatgtgcgagcttcagccactagactac 76  Q
    |||||||||||||||||||||| ||||||||||||    
T  36449111 catttaaaatgtgcgagcttcaaccactagactac 36449077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 7717611 - 7717558
Alignment:
Q  22 tcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagacta 75  Q
    ||||||||  ||||||| ||||||||||||||| ||||| | ||||||||||||    
T  7717611 tcggacactccacttctccacatttaaaatgtgtgagctccggccactagacta 7717558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 25067275 - 25067316
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgagct 60  Q
    ||||| |||||||||||||| || ||||||||||||||||||    
T  25067275 acctcagacacctcacttctccatatttaaaatgtgcgagct 25067316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 32854597 - 32854650
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    ||||||||  |||||| ||||||||||||||| ||||| |||||||||| ||||    
T  32854597 cggacaccctacttctccacatttaaaatgtgtgagctccagccactaggctac 32854650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 14518345 - 14518405
Alignment:
Q  19 acctcggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||| ||||  ||||||| || |||||||||||| ||||| |||||||||| |||||||    
T  14518345 acctcgaacactccacttctccatatttaaaatgtgtgagctccagccactaggctacctg 14518405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 17777168 - 17777132
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagc 59  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  17777168 cggacaccccacttctccacatttaaaatgtgcgagc 17777132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 23984228 - 23984172
Alignment:
Q  23 cggacacctcacttcttcacatttaaaatgtgcgagcttcagccactagactacctg 79  Q
    |||||||| ||||||| ||||||||||||||| || || |||||||||  |||||||    
T  23984228 cggacaccccacttctccacatttaaaatgtgtgaactccagccactaagctacctg 23984172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 34459285 - 34459317
Alignment:
Q  22 tcggacacctcacttcttcacatttaaaatgtg 54  Q
    ||||||||| |||||||||||||||||||||||    
T  34459285 tcggacaccacacttcttcacatttaaaatgtg 34459317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 39635374 - 39635418
Alignment:
Q  32 cacttcttcacatttaaaatgtgcgagcttcagccactagactac 76  Q
    ||||||| ||||||||||||||| || || |||||||||||||||    
T  39635374 cacttctccacatttaaaatgtgtgatctccagccactagactac 39635418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 41185022 - 41185086
Alignment:
Q  163 tcttgattacaaaaaataacttgattatgctgcttccaaataatccacaagcaactcatccatat 227  Q
    ||||||||||||||||||| || || ||| || ||||||||||| ||||| ||| |||| |||||    
T  41185022 tcttgattacaaaaaataatttaataatgttgtttccaaataattcacaaacaagtcattcatat 41185086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1625 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 592 - 527
Alignment:
Q  165 ttgattacaaaaaataacttgattatgctgcttccaaataatccacaagcaactcatccatatcaa 230  Q
    |||||||  ||||| ||||||||||||   |||||||||||||||||| |||  ||||||||||||    
T  592 ttgattatcaaaaacaacttgattatgagacttccaaataatccacaaacaaaccatccatatcaa 527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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