View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_48 (Length: 400)
Name: NF6641_high_48
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 171 - 382
Target Start/End: Complemental strand, 36102145 - 36101934
Alignment:
| Q |
171 |
cattagtcataccccctccctaacatgatataataaaaattgcgttaaaggaagttgatgtatttgatactaaatttaaattaaatatatcaatttttat |
270 |
Q |
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| T |
36102145 |
cattagtcataccccctccctaatatgatataataaaaattgcgttaaaggaagttgatgtatttggtactaaatttaaattaaatatatcaatttttat |
36102046 |
T |
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| Q |
271 |
tgacttattgtgtttatattttgttacggaggtaggttataattaattaaaaaatactaatcaattgcagtcacaaagccaacaattggagatgagtact |
370 |
Q |
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| T |
36102045 |
tgactcattgtgtttatattttgttacggaggtaggttataattaattaaaaaatactaatcaattgcagtcacaaagccaacaattgaagatgagtact |
36101946 |
T |
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| Q |
371 |
gaggttaagaag |
382 |
Q |
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||||| |||||| |
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| T |
36101945 |
gaggtgaagaag |
36101934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 36102315 - 36102200
Alignment:
| Q |
1 |
tggacttaaaatgagagatttagaaagcgatttgagacaaatagaaagaatcgagcatcatggaaggaaatctacacacaagttttcttagcattcagac |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
36102315 |
tggacttaaaatgagagatttagaaagcgattttagacaaatagaaagaatcgagcatcaaggaaggaaatctacacacaagttttcttagtattcagaa |
36102216 |
T |
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| Q |
101 |
tttggctagacatacg |
116 |
Q |
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| T |
36102215 |
tttgactagacatacg |
36102200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 11386386 - 11386335
Alignment:
| Q |
222 |
aagttgatgtatttgatactaaatttaaattaaatatatcaatttttattga |
273 |
Q |
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| T |
11386386 |
aagttgatgtatttgatacaaattttgaattaaatatattaatttttgttga |
11386335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 33615328 - 33615276
Alignment:
| Q |
222 |
aagttgatgtatttgatactaaatttaaattaaatatatcaatttttattgac |
274 |
Q |
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||||||||||||||||||| || ||| ||| |||||||| ||| ||||||||| |
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| T |
33615328 |
aagttgatgtatttgatacaaattttgaatcaaatatattaatatttattgac |
33615276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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