View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_5 (Length: 692)
Name: NF6641_high_5
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_5 |
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| [»] scaffold0060 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 554; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 4 - 675
Target Start/End: Original strand, 8434409 - 8435088
Alignment:
| Q |
4 |
tcatcaccatcccaacccttcatgtgtgttagaagaagaagcatgaaattgatccacattaacatagactccagaaattaagagtacaagaagttataaa |
103 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8434409 |
tcatcgccatcccaacccttcatgtgtgtgagaagaagaagcatgaaattgatccacgttaacatagactccagaaattaagagtacaagaagttataaa |
8434508 |
T |
|
| Q |
104 |
gaacaacagattacaaatt-------taaaaaatttcaaatttgtatatcgatcgccctgtataagttctcaaccccaacacacacaaaaa-tagcccat |
195 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
8434509 |
gaacaacagattacaaattacaaatttaaaaaatttcaaatttgtatatcgatcgccctgtataagttctcaaccccaacacacaaaaaaaatagcccat |
8434608 |
T |
|
| Q |
196 |
aggtcagtagtaaacaaagctggaggaaagttgcttatcaactcaacatcgaatcattgttgcactgattggatgtcatacgatggttatataactcact |
295 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8434609 |
aggtcagtagtaaacaaagctggaggatagttgcttatcaactcaacatcgaatcattgttgcactgattggatgtcatacgatggttttataactcact |
8434708 |
T |
|
| Q |
296 |
tactctctacatttcattaaagttttccgatgtgggacttaatgatgtttcctgcagctcaaaccttgactatactagtctccattccatgaaatcaatt |
395 |
Q |
| |
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||||||||||||||||||||| |||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8434709 |
tactctctacatttcattaaaattttccgatgtgatgttttctttcctgtcctgcagctcaaaccttgactatactagtctccattccatgaaatcaatt |
8434808 |
T |
|
| Q |
396 |
aaaccacatttaatccattaaaaacaaaaggcaacacagttagtccaaagcattaagtcccaatctaaaataaacactgcaactcaaacaaactgaaatt |
495 |
Q |
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| T |
8434809 |
aaaccatatttaatccattaaaaacaaaaggcaagacagttagtccaaagcattaagtcccaatctaaaataaacactgtaactcaaacaaactgaaatt |
8434908 |
T |
|
| Q |
496 |
gttccctaatatagtcaacatccacatttaagtagaacaaaacaaagttcttcccaccaaagtccttatattaaagccacaggctagataatgtgtagat |
595 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8434909 |
gttccctaatatagtcaacatctacatttgagtagaacaaaacaaagttcttcccaccaaagtccttatattaaagccacaggctagataatgtgtagat |
8435008 |
T |
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| Q |
596 |
tgcataattaaataggcatttgcataaatcactaatgtgtagacaaaataattagcaaaaacaggcatctctatatagcc |
675 |
Q |
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| T |
8435009 |
tgcataattaaataggcatttgcataaatcactaatgtgtagacaaaataattagcaaaaacaggcatctctatatagcc |
8435088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 396 - 500
Target Start/End: Complemental strand, 8390887 - 8390783
Alignment:
| Q |
396 |
aaaccacatttaatccattaaaaacaaaaggcaacacagttagtccaaagcattaagtcccaatctaaaataaacactgcaactcaaacaaactgaaatt |
495 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||| || |||| ||| ||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
8390887 |
aaaccacatttaatccattaaaaacaaaaggcaagacaattagtctaaggcataaagccccaatccaaaatcaacactgcaactcaaacaaactgaaatt |
8390788 |
T |
|
| Q |
496 |
gttcc |
500 |
Q |
| |
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||||| |
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| T |
8390787 |
gttcc |
8390783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 450 - 573
Target Start/End: Original strand, 8378190 - 8378313
Alignment:
| Q |
450 |
aagtcccaatctaaaataaacactgcaactcaaacaaactgaaattgttccctaatatagtcaacatccacatttaagtagaacaaaacaaagttcttcc |
549 |
Q |
| |
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||||||||| | |||| |||||| |||||||||||||| | | ||| |||| | ||||||||||||||||| |||| |||||||| |||||||||| |
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| T |
8378190 |
aagtcccaaaccaaaagcaacactaaaactcaaacaaacttacacaattctctaacacagtcaacatccacatttgagtaaaacaaaaccaagttcttcc |
8378289 |
T |
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| Q |
550 |
caccaaagtccttatattaaagcc |
573 |
Q |
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|||||| |||| |||||| ||||| |
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| T |
8378290 |
caccaatgtccatatattgaagcc |
8378313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 8431525 - 8431631
Alignment:
| Q |
77 |
gaaattaagagtacaagaagttataaagaacaacaga-------ttacaaatttaaaaaatttcaaatttgtatatcgatcgccctgtataagttctcaa |
169 |
Q |
| |
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||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| || || || ||||||||||||| |
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| T |
8431525 |
gaaattaggagtacaagaagttatagagagcaacagaatgcagattacaaatttaaaaaatttcaaatttgtatgtcagtcaccgcctataagttctcaa |
8431624 |
T |
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| Q |
170 |
ccccaac |
176 |
Q |
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||||||| |
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| T |
8431625 |
ccccaac |
8431631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 8431695 - 8431771
Alignment:
| Q |
260 |
ctgattggatgtcatacgatggttatataactcacttactctctacatttcattaaagttttccgatgtgggactta |
336 |
Q |
| |
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|||| |||||| |||| | ||||| ||||||||||||||||||||| ||||| ||||||||| ||||||| |||||| |
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| T |
8431695 |
ctgaatggatgccataggttggttttataactcacttactctctacgtttcagtaaagtttttcgatgtgagactta |
8431771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 77 - 643
Target Start/End: Complemental strand, 75953 - 75367
Alignment:
| Q |
77 |
gaaattaagagtacaagaagttataaagaacaac-agattacaaatt-------taaaaaatttcaaatttgtatatcgatcgccctgtataagttctca |
168 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| || || ||||||||||||||||||||| |
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| T |
75953 |
gaaattaagagtacaagaagttataaagaacaaccagattacaaattacgaatttaaaaaatttcaaatttgcatctcaatcgccctgtataagttctca |
75854 |
T |
|
| Q |
169 |
accccaacacacacaaaaatagcccataggtcagtagtaaacaaagctggaggaaagttgcttatcaactcaacatcgaatcattgttgcactgattgga |
268 |
Q |
| |
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|||||||| |||| |||||||| ||||||||| || |||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||||||| || |
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| T |
75853 |
accccaactcacaaaaaaatagaccataggtcggtcgtaaacaaagctagaggatagttgcctatcaactcaacatcgaatcattgttacactgatcaga |
75754 |
T |
|
| Q |
269 |
tgtcatacgatggttatataactcacttactctctacatttcattaaagttttccgatgtgggacttaatgatgttt------------cctgcagctca |
356 |
Q |
| |
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||||||||||||||| ||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
75753 |
tgtcatacgatggttttataactaacttactcgctacatttcattaaagtttttcgatgtgggacttaatgatgttttcttgcctttgtcctgcagctca |
75654 |
T |
|
| Q |
357 |
aaccttgactatactagtctccattccatgaaatcaattaaaccacatttaatccattaaaaacaaaaggcaacacagttagtccaaagcattaagtccc |
456 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
75653 |
aaccttcactatactagtctccattccatgaaatcaattaaaccacatttaatccattaaaaacaaaaggcaagacagttagtccaaagcattaagtccc |
75554 |
T |
|
| Q |
457 |
aatctaaaataaacactgcaactcaaacaaactgaaattgttccctaatatagtcaacatccacatttaagtagaacaaaacaaagttcttcccaccaaa |
556 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
75553 |
aatctaaaataaacactgtaactcaaacaaactgaaattgttccctaatatagtcaacatctacatttgagtagaacaaaacaaagttcttcccaccaaa |
75454 |
T |
|
| Q |
557 |
gtccttatattaaagccacaggctagataatgtgtagattgcataattaaataggcatttgcataaatcactaatgtgtagacaaaa |
643 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
75453 |
gtccttatattaaagccacaggctagataatgtgtagattgcataattaaataggcatttgcataaatcactaatgtgtagacaaaa |
75367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 76071 - 76023
Alignment:
| Q |
20 |
ccttcatgtgtgttagaagaagaagcatgaaattgatccacattaacat |
68 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
76071 |
ccttcatgtgtgtgggaagaagaagcatgaaattgatccacattaacat |
76023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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