View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_52 (Length: 384)
Name: NF6641_high_52
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 41 - 367
Target Start/End: Complemental strand, 28119654 - 28119332
Alignment:
| Q |
41 |
acatgttaattaaattaaccctagtttccaaattggagtagcccagatttggtgaattaaatacctgcaactaatannnnnnnctctcctcttggtgaat |
140 |
Q |
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| T |
28119654 |
acatgttaattaaattaaccatagtttccaaattggagtagcccagatttggtgaattaaatacctgcaactaatatttttttctctcctcttggtgaat |
28119555 |
T |
|
| Q |
141 |
taaaaacttacatttaaccttgaccnnnnnnnnnnnnctaacatttaacaataaannnnnnnnagtaactataattctaacaagaatttctaataatgat |
240 |
Q |
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| T |
28119554 |
taaaaacttacatttaaccttgaccaaaaaaaaaaa-ctaacatttaacaatattttttttttagtaactataattctaacaagaatttctaat---gat |
28119459 |
T |
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| Q |
241 |
caaaatcaaaattaatcgaaacattacctgttgctgaagggcaacgatgtgaccaacacatccatagataggatctctcaaccttgattgagcttcatag |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28119458 |
caaaatcaaaattaatcgaaacattacctgttgctgaagggcaacgatgtgaccaacacatccatagataggatctctcaaccttgattgagcttcatag |
28119359 |
T |
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| Q |
341 |
caaagagagactgcagcatcaagcctc |
367 |
Q |
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||||||||||||||||||||||||||| |
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| T |
28119358 |
caaagagagactgcagcatcaagcctc |
28119332 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 263 - 344
Target Start/End: Original strand, 13270480 - 13270561
Alignment:
| Q |
263 |
attacctgttgctgaagggcaacgatgtgaccaacacatccatagataggatctctcaaccttgattgagcttcatagcaaa |
344 |
Q |
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||||||||||||||||| | || ||| ||| ||||||| ||| |||| |||||||||||||||| |||||||||||| |||| |
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| T |
13270480 |
attacctgttgctgaagagtaaagatatgagcaacacaaccaaagatgggatctctcaaccttgcttgagcttcataacaaa |
13270561 |
T |
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