View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6641_high_53 (Length: 383)
Name: NF6641_high_53
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_53 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 366
Target Start/End: Complemental strand, 41558822 - 41558466
Alignment:
| Q |
9 |
gagaagaaagaaattggattcttcccatacgagtaccagacaaacacaacttcacaaactttgtacaagaaattgacattttgattccaaactttgaaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41558822 |
gagaagaaagaaattggattcttcccatgcgagtaccagacaaacacaacttcacaaactttgtacaagaaattgacattttgatttcaaactttgaaaa |
41558723 |
T |
|
| Q |
109 |
tgacattttatgtatttaaaatcaacgcatatgtgacaattcatttcatgtatttaaaatattcatagtgttccaacatatctgagtttttcttaaaaaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
41558722 |
tgacattttatgtatttaaaatcaacgcatatgtggcaactcatttcatgtatttaaaatattcatattgttccaacatatctgagtttgtcttaaaaaa |
41558623 |
T |
|
| Q |
209 |
tcaaagattgatctaatggtttactcatttttattacaacccaaatcatacaagttacacttacnnnnnnnnnttgattattttattattaactttgtga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
41558622 |
tcaaagattgatctaatggtttactcatttttattacaacccaaatcatacaagttacacttac-aaaaaaaattgattattttattattaacttaatga |
41558524 |
T |
|
| Q |
309 |
tttagaatagaaatacattttaaaaaatcatattttattggttttaaatacacataaa |
366 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41558523 |
tttagaatagaaatacatttttaaaaatcatattttattggttttaaatacacataaa |
41558466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University