View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_55 (Length: 378)
Name: NF6641_high_55
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_55 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 31057526 - 31057891
Alignment:
| Q |
1 |
tccgaaaatgattttgttggacatttgccgtctcaaatatgctctggtggatcgttaaggttattaaatgctgatcacaaccgtttcaccggtccaatac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31057526 |
tccgaaaatgattttgttggacatttgccgtctcaaatatgctctggtggatcgttaaggttattaaatgctgatcacaaccgtttcaccggtccaatac |
31057625 |
T |
|
| Q |
101 |
caacaagtttgaaaacctgttctagcattgaaagaatcacgctggaggtgaatcaaatagaaggtgatatagcacaagattttggtgtatatccgaagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31057626 |
caacaagtttgaaaacctgttctagcattgaaagaatcacgctggaggtgaatcaaatagaaggtgatatagcacaagattttggtgtatatccgaagtt |
31057725 |
T |
|
| Q |
201 |
gcaatatctagatctgagtgacaataaatttcatggacaaatttcaccaaactgggggaagtctcttaatcttcagacctttataatatctaacaataat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31057726 |
gcaatatctagatctgagtgacaataaatttcatggacaaatttcaccaaactgggggaagtctcttaatcttcagacctttataatatctaacaataat |
31057825 |
T |
|
| Q |
301 |
atttctggtgttataccattagattttattggtttaaccaagctgggcgtgcttcatctttcttca |
366 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31057826 |
atttctggtgttataccattagattttattggtttaaccaagctgggcgtgcttcatctttcttca |
31057891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 366
Target Start/End: Original strand, 31139342 - 31139703
Alignment:
| Q |
5 |
aaaatgattttgttggacatttgccgtctcaaatatgctctggtggatcgttaaggttattaaatgctgatcacaaccgtttcaccggtccaataccaac |
104 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31139342 |
aaaatgattttgttggccatttgccgtctcaaatatgctctggtggattgttaacgttattaaatgctgatcacaaccgtttcaccggtcctataccaac |
31139441 |
T |
|
| Q |
105 |
aagtttgaaaacctgttctagcattgaaagaatcacgctggaggtgaatcaaatagaaggtgatatagcacaagattttggtgtatatccgaagttgcaa |
204 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| | |
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| T |
31139442 |
aagtttgaaaaactgttctagcattgaaagaatcaggctggaggtgaatcaaatagaaggtgatatagcacaagattttggtgtgtatccaaatttgcga |
31139541 |
T |
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| Q |
205 |
tatctagatctgagtgacaataaatttcatggacaaatttcaccaaactgggggaagtctcttaatcttcagacctttataatatctaacaataatattt |
304 |
Q |
| |
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|| | ||| | ||||| |||||| |||||||||| ||||||||||||||||| ||| |||||||||| | || || ||||| ||||||||||||| |
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| T |
31139542 |
tactttgatgtcagtgataataaacttcatggacacatttcaccaaactggggaaagagtcttaatcttgatactttccagatatccaacaataatattt |
31139641 |
T |
|
| Q |
305 |
ctggtgttataccattagattttattggtttaaccaagctgggcgtgcttcatctttcttca |
366 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||| || |||||||||||||||| |
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|
| T |
31139642 |
ctggggttataccattagaacttattggtttaaccaagctaggtaggcttcatctttcttca |
31139703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 31101961 - 31102326
Alignment:
| Q |
1 |
tccgaaaatgattttgttggacatttgccgtctcaaatatgctctggtggatcgttaaggttattaaatgctgatcacaaccgtttcaccggtccaatac |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| ||| | || || || |||| | |||| ||| ||| || |||||||| |||||| ||| |
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| T |
31101961 |
tccgaaaatgattttgttggccatttgccgtctcaaatgtgcaccgggggctcattaaaatacttaagtgcatttcataatcgtttcactggtccagtac |
31102060 |
T |
|
| Q |
101 |
caacaagtttgaaaacctgttctagcattgaaagaatcacgctggaggtgaatcaaatagaaggtgatatagcacaagattttggtgtatatccgaagtt |
200 |
Q |
| |
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|||||||||| |||| ||| ||||||||||||||||||| | |||| |||||||| ||||| ||||||||| ||||||||||||| |||||||| || |
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| T |
31102061 |
caacaagtttaaaaagctgctctagcattgaaagaatcagaattgagggtaatcaaatcgaaggagatatagcagaagattttggtgtgtatccgaattt |
31102160 |
T |
|
| Q |
201 |
gcaatatctagatctgagtgacaataaatttcatggacaaatttcaccaaactgggggaagtctcttaatcttcagacctttataatatctaacaataat |
300 |
Q |
| |
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|| ||| | || |||||||| |||||||||||||| || ||||||||||||||||||||||||||| ||||| | ||||| || |||||||||| |||| |
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| T |
31102161 |
gcgatacgttgacctgagtgataataaatttcatggccacatttcaccaaactgggggaagtctcttgatcttgaaaccttcatgatatctaacactaat |
31102260 |
T |
|
| Q |
301 |
atttctggtgttataccattagattttattggtttaaccaagctgggcgtgcttcatctttcttca |
366 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
31102261 |
atttctggtggtataccattagattttattggtttaaccaagctaggtaggcttcatctttcttca |
31102326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 7 - 366
Target Start/End: Original strand, 31183059 - 31183418
Alignment:
| Q |
7 |
aatgattttgttggacatttgccgtctcaaatatgctctggtggatcgttaaggttattaaatgctgatcacaaccgtttcaccggtccaataccaacaa |
106 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||| |||| ||| |||||||||||| | ||||||||||| |||||||||||||||| |
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| T |
31183059 |
aatgattttgttggccatttgccgtctcaaatatgttctggtggaaaattaacgttcttaaatgctgataataaccgtttcactggtccaataccaacaa |
31183158 |
T |
|
| Q |
107 |
gtttgaaaacctgttctagcattgaaagaatcacgctggaggtgaatcaaatagaaggtgatatagcacaagattttggtgtatatccgaagttgcaata |
206 |
Q |
| |
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||||||||| |||||||||||| ||| |||| | |||| |||||||||||||||||||||||||||| ||||||||| ||||| || |||||||| |
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| T |
31183159 |
gtttgaaaaactgttctagcatccgaaggatcagaattgaggcaaatcaaatagaaggtgatatagcacaagtttttggtgtgtatccaaatttgcaata |
31183258 |
T |
|
| Q |
207 |
tctagatctgagtgacaataaatttcatggacaaatttcaccaaactgggggaagtctcttaatcttcagacctttataatatctaacaataatatttct |
306 |
Q |
| |
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| || ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| || ||| || | ||||| ||||||||||||||| |
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| T |
31183259 |
ctttgaggcaagtgataataaatttcatggacaaatttcaccaaactggggaaagtgtcttaatattgagaatttcaagatatccaacaataatatttct |
31183358 |
T |
|
| Q |
307 |
ggtgttataccattagattttattggtttaaccaagctgggcgtgcttcatctttcttca |
366 |
Q |
| |
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|||| |||||||||||| ||| | |||| |||||||| || |||||||||||||||| |
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|
| T |
31183359 |
ggtgctataccattagaacttactcgtttgaccaagctaggtaggcttcatctttcttca |
31183418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 78 - 321
Target Start/End: Original strand, 31214822 - 31215065
Alignment:
| Q |
78 |
caaccgtttcaccggtccaataccaacaagtttgaaaacctgttctagcattgaaagaatcacgctggaggtgaatcaaatagaaggtgatatagcacaa |
177 |
Q |
| |
|
||||| ||| || |||||||||||||| |||||||||| ||| | ||||||| |||||||| | ||| |||||||||||||| |||||| ||||| |
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| T |
31214822 |
caaccattttactggtccaataccaactagtttgaaaaactgcacaagcattgtaagaatcagaattcaggataatcaaatagaaggagatatatcacaa |
31214921 |
T |
|
| Q |
178 |
gattttggtgtatatccgaagttgcaatatctagatctgagtgacaataaatttcatggacaaatttcaccaaactgggggaagtctcttaatcttcaga |
277 |
Q |
| |
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|||||||||||||||||||||||| |||| || || ||||||||||||||| |||||||||| |||||||||||||||||||||| | |||||| | |
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| T |
31214922 |
gattttggtgtatatccgaagttggaataccttgaactgagtgacaataaacttcatggacacatttcaccaaactgggggaagtgccctaatctctgca |
31215021 |
T |
|
| Q |
278 |
cctttataatatctaacaataatatttctggtgttataccatta |
321 |
Q |
| |
|
||| || ||||| ||||||||||| ||||||| ||||||||| |
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| T |
31215022 |
acttcatgatatccaacaataatatcactggtgtcataccatta |
31215065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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