View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_high_57 (Length: 369)

Name: NF6641_high_57
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_high_57
NF6641_high_57
[»] chr5 (5 HSPs)
chr5 (23-349)||(33807887-33808213)
chr5 (23-349)||(33811541-33811867)
chr5 (23-349)||(33816459-33816785)
chr5 (173-351)||(16698504-16698672)
chr5 (173-268)||(22763905-22764002)
[»] chr6 (4 HSPs)
chr6 (52-351)||(31151924-31152226)
chr6 (154-350)||(22981504-22981711)
chr6 (154-350)||(23806697-23806904)
chr6 (92-275)||(1111378-1111564)
[»] chr3 (10 HSPs)
chr3 (36-350)||(50603088-50603404)
chr3 (101-349)||(54967210-54967477)
chr3 (154-349)||(44782524-44782733)
chr3 (101-268)||(39298736-39298908)
chr3 (95-349)||(31725198-31725448)
chr3 (154-270)||(18556392-18556511)
chr3 (154-268)||(54979933-54980051)
chr3 (173-272)||(17645800-17645897)
chr3 (297-352)||(17645928-17645984)
chr3 (284-337)||(54979854-54979905)
[»] chr1 (2 HSPs)
chr1 (136-352)||(29706851-29707069)
chr1 (176-268)||(27642132-27642225)
[»] scaffold0045 (1 HSPs)
scaffold0045 (101-331)||(26516-26752)
[»] chr8 (3 HSPs)
chr8 (101-350)||(41481548-41481816)
chr8 (101-349)||(36167547-36167813)
chr8 (157-344)||(18951129-18951326)
[»] chr7 (11 HSPs)
chr7 (101-349)||(25857131-25857395)
chr7 (154-349)||(4842648-4842857)
chr7 (101-349)||(4835575-4835840)
chr7 (154-281)||(13465036-13465165)
chr7 (91-260)||(8252686-8252853)
chr7 (156-278)||(17845847-17845970)
chr7 (173-268)||(27341025-27341120)
chr7 (154-268)||(24379370-24379487)
chr7 (299-350)||(24380113-24380164)
chr7 (202-268)||(38994151-38994218)
chr7 (279-349)||(24379279-24379347)
[»] scaffold0479 (1 HSPs)
scaffold0479 (154-349)||(2727-2936)
[»] chr4 (3 HSPs)
chr4 (101-349)||(9757212-9757480)
chr4 (173-270)||(37286972-37287069)
chr4 (156-268)||(42682924-42683038)
[»] scaffold0003 (1 HSPs)
scaffold0003 (173-349)||(342217-342404)
[»] chr2 (2 HSPs)
chr2 (173-266)||(37037942-37038035)
chr2 (297-331)||(37038074-37038108)


Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 23 - 349
Target Start/End: Original strand, 33807887 - 33808213
Alignment:
Q  23 cacaccacaacataatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagag 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33807887 cacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagag 33807986  T
Q  123 ttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtccc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33807987 ttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtccc 33808086  T
Q  223 gtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtcattttacgtttccgctaaagtgcctattttgagttcacggagga 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808087 gtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtcattttacgtttccgctaaagtgcctattttgagttcacggagga 33808186  T
Q  323 gggaaattaagcaggcatttcccaaca 349  Q
    ||||||||| |||||||||||||||||    
T  33808187 gggaaattatgcaggcatttcccaaca 33808213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 23 - 349
Target Start/End: Original strand, 33811541 - 33811867
Alignment:
Q  23 cacaccacaacataatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagag 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811541 cacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagag 33811640  T
Q  123 ttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtccc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33811641 ttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtccc 33811740  T
Q  223 gtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtcattttacgtttccgctaaagtgcctattttgagttcacggagga 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811741 gtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtcattttacgtttccgctaaagtgcctattttgagttcacggagga 33811840  T
Q  323 gggaaattaagcaggcatttcccaaca 349  Q
    ||||||||| |||||||||||||||||    
T  33811841 gggaaattatgcaggcatttcccaaca 33811867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 23 - 349
Target Start/End: Original strand, 33816459 - 33816785
Alignment:
Q  23 cacaccacaacataatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagag 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816459 cacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagag 33816558  T
Q  123 ttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtccc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33816559 ttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtccc 33816658  T
Q  223 gtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtcattttacgtttccgctaaagtgcctattttgagttcacggagga 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816659 gtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtcattttacgtttccgctaaagtgcctattttgagttcacggagga 33816758  T
Q  323 gggaaattaagcaggcatttcccaaca 349  Q
    ||||||||| |||||||||||||||||    
T  33816759 gggaaattatgcaggcatttcccaaca 33816785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 351
Target Start/End: Original strand, 16698504 - 16698672
Alignment:
Q  173 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatttt 270  Q
    ||||||||||||||| ||||||||||| | |||||||||   | ||||||| |  ||||||| || ||||||||||||||| ||||||| ||||||||      
T  16698504 ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttccacactaaaatt-- 16698601  T
Q  271 gttgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacaat 351  Q
             ||||  |||||||||  |||||||||| ||||||||||||||| |||||||| |||   |||||||||||||    
T  16698602 --------cttttttgtttccgct--agtgcctattctgagttcacggaggatggaaattatgcatatatttcccaacaat 16698672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 22764002 - 22763905
Alignment:
Q  173 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 268  Q
    ||||||||||||||| |||||||   | | ||||||||||  |  ||||||||||||||||| || |||| ||||||||||||||||| |||||||||    
T  22764002 ttgtattcccattatcattatagcataagttttaagaggcccaatggtcccgtggtttttccctttctcatattgagaaggttttccatgctaaaatt 22763905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 52 - 351
Target Start/End: Complemental strand, 31152226 - 31151924
Alignment:
Q  52 gagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagtta 151  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||||    
T  31152226 gagttgagagaaaaatagagagttcctcgtaagagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagtta 31152127  T
Q  152 ggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggt-ttttccttactcacattgagaag 250  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||    
T  31152126 ggtccatctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaag 31152027  T
Q  251 gttttccacgctaaaattttgt--tgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaac 348  Q
    |||||||||  |||||||||||  |||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||    
T  31152026 gttttccacattaaaattttgttgtgtgtcattttatgtttccgctaaagtgcctattttgagttcagagaggagggaaattatgcaggcatttcccaac 31151927  T
Q  349 aat 351  Q
    |||    
T  31151926 aat 31151924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 154 - 350
Target Start/End: Original strand, 22981504 - 22981711
Alignment:
Q  154 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 250  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | |||||||||||||||||| || ||||||||||||||    
T  22981504 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 22981603  T
Q  251 gttttccacgctaaaattttgttgtgtca-----------ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggca 339  Q
    |||||||||||||||||| |  |||||||           ||| |||||||||||  ||||||| ||||||||||||||||| ||||||||| |||| ||    
T  22981604 gttttccacgctaaaattct-ctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtca 22981700  T
Q  340 tttcccaacaa 350  Q
    |||||||||||    
T  22981701 tttcccaacaa 22981711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 154 - 350
Target Start/End: Complemental strand, 23806904 - 23806697
Alignment:
Q  154 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 250  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | |||||||||||||||||| || ||||||||||||||    
T  23806904 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 23806805  T
Q  251 gttttccacgctaaaattttgttgtgtca-----------ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggca 339  Q
    |||||||||||||||||| |  |||||||           ||| |||||||||||  ||||||| ||||||||||||||||| ||||||||| |||| ||    
T  23806804 gttttccacgctaaaattct-ctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtca 23806708  T
Q  340 tttcccaacaa 350  Q
    |||||||||||    
T  23806707 tttcccaacaa 23806697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 92 - 275
Target Start/End: Complemental strand, 1111564 - 1111378
Alignment:
Q  92 gagaaaaatatagtgagccaatttgtgagagttgtatcta--caaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattatta 189  Q
    ||||||||||||  || |||||||||||||  | ||||||  |||||||||||||||||||||||  || | ||||||||  ||||||||| ||||||||    
T  1111564 gagaaaaatataaggaaccaatttgtgagaaatatatctatacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattatta 1111465  T
Q  190 ttatagtgg-agatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgt 275  Q
    ||||  | | ||||||||||| |||| | ||||| || |||||||||| | ||||| ||||||||||| || |||||||||||||||    
T  1111464 ttattatagtagatttaagagacttatgagtcccatgatttttccttatttacattcagaaggttttctacactaaaattttgttgt 1111378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 36 - 350
Target Start/End: Original strand, 50603088 - 50603404
Alignment:
Q  36 aatcctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgt--gagagttgtatctaca 133  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||  ||||||||||||||||    
T  50603088 aatcctcactcacacagagttgagagaaaaatagaaagttcctcataagagtg--agagaaaaatatagtgagccaatttgtatgagagttgtatctaca 50603185  T
Q  134 aattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttcc 233  Q
    |||||||||| ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |    
T  50603186 aattgagatatatagttaggtccatctaaaggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggttccgtggttttttc 50603285  T
Q  234 ttactcacattgagaaggttttccacgctaaaattttgt--tgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaatta 331  Q
    ||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||     
T  50603286 ttactcacattgagaaggttttccacgctaaaattttattgtgtgtcattttacgttttcgctaaagtgtctattttgagttcacggaggagagaaattg 50603385  T
Q  332 agcaggcatttcccaacaa 350  Q
      | |||||||||||||||    
T  50603386 tactggcatttcccaacaa 50603404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 349
Target Start/End: Complemental strand, 54967477 - 54967210
Alignment:
Q  101 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 194  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  54967477 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 54967378  T
Q  195 gtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt-ttgttgtgtc-----------a 279  Q
    |||||  |||  |||||||  | |||||||||||||||||| || |||| ||||||||||||||||||||||||||| |  |||||||           |    
T  54967377 gtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgctttta 54967278  T
Q  280 ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 349  Q
    ||| |||||||||||  ||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  54967277 tttcacgtttccgct--agtgcctattttgagttgacggaggagggaaattatgcaggcatttcccaaca 54967210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 349
Target Start/End: Complemental strand, 44782733 - 44782524
Alignment:
Q  154 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 249  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||   | ||||||||||||||||  |||| |||| ||||||||    
T  44782733 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaa 44782634  T
Q  250 ggttttccacgctaaaatt-ttgttgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg 337  Q
    ||||||||||||||||||| |  |||||||           |||| |||||||||||  |||| |||||||||||||||||||||||||||||| |||||    
T  44782633 ggttttccacgctaaaattctctttgtgtcattacgtttatatttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcagg 44782536  T
Q  338 catttcccaaca 349  Q
    ||||||||||||    
T  44782535 catttcccaaca 44782524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 101 - 268
Target Start/End: Original strand, 39298736 - 39298908
Alignment:
Q  101 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 194  Q
    ||||||||||||||||||||||| ||   |||||||||||| | |||     ||||| ||||||| ||||||||| | |||||||||| |||| ||||||    
T  39298736 atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata 39298834  T
Q  195 gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 268  Q
    |||||  ||||||||||  | |||||||||| |||||||||  |||||||||||||||||| ||| ||||||||    
T  39298835 gtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttttcacactaaaatt 39298908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 349
Target Start/End: Complemental strand, 31725448 - 31725198
Alignment:
Q  95 aaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattata 194  Q
    ||||||||||| |  |||||||||||| ||||  |||||||||||||||||| || |||||||||| || |||||||||||||||| ||||||| |||||    
T  31725448 aaaaatatagttaatcaatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttata 31725351  T
Q  195 gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtcattttacgtttccgct 294  Q
     ||||  | |||| |   ||  | |    |||||||||||||| ||  ||| ||||||||||||| ||||| |||| ||||| ||| || ||||||||||    
T  31725350 ttggatgtctaagggatctatagattgtttggtttttccttacccatgttgtgaaggttttccacactaaactttt-ttgtggcatatt-cgtttccgct 31725253  T
Q  295 aaagtgccta-ttttgagttcacggaggagggaaattaagcaggcatttcccaaca 349  Q
    ||| |||||| |||||| ||||||||| |||  ||||| |||| ||||||||||||    
T  31725252 aaa-tgcctatttttgaattcacggagaaggtgaattatgcagacatttcccaaca 31725198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 18556511 - 18556392
Alignment:
Q  154 tccacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaag 250  Q
    ||||||| ||||||||| | |||||||| |||| | |||||||||||  |||||||||||   ||||||||||||||||  |||| |||| |||||||||    
T  18556511 tccacctaagggtgaagttgttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaag 18556412  T
Q  251 gttttccacgctaaaatttt 270  Q
    ||||||||||||||||||||    
T  18556411 gttttccacgctaaaatttt 18556392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 268
Target Start/End: Complemental strand, 54980051 - 54979933
Alignment:
Q  154 tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaa 249  Q
    ||||||| ||||||||| | ||||||||||||||| |||||||||||  |||  |||||||  | |||||||||||||||||| || |||| ||||||||    
T  54980051 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa 54979952  T
Q  250 ggttttccacgctaaaatt 268  Q
    ||||||||| |||||||||    
T  54979951 ggttttccatgctaaaatt 54979933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 272
Target Start/End: Original strand, 17645800 - 17645897
Alignment:
Q  173 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt 272  Q
    |||||||  |||||| |||||||||||  ||||||| ||| | | ||||||||||||||  ||  | | |||||||||||||||||||||||||||||||    
T  17645800 ttgtattgtcattatcattatagtggaagtttaagacgctcaagagtcccgtggttttttttt--ttatattgagaaggttttccacgctaaaattttgt 17645897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 17645928 - 17645984
Alignment:
Q  297 agtgcctattttgagttcacggaggagggaaattaagcagg-catttcccaacaatt 352  Q
    |||| |||||||||||||||||| ||||||||||| | ||| |||||||||||||||    
T  17645928 agtgtctattttgagttcacggatgagggaaattatggaggtcatttcccaacaatt 17645984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 54979905 - 54979854
Alignment:
Q  284 acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg 337  Q
    ||||||||||||  |||| ||||||||||| ||||||||||||||||| |||||    
T  54979905 acgtttccgcta--gtgcttattttgagttgacggaggagggaaattatgcagg 54979854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 136 - 352
Target Start/End: Complemental strand, 29707069 - 29706851
Alignment:
Q  136 ttgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttcctt 235  Q
    |||||||||||||||||||||||| |||||||||||||| |  | ||||||||||||||||||||||||||||||  || | |||||||| || ||||||    
T  29707069 ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt 29706970  T
Q  236 actcacattgagaaggttttccacgctaaaattttgtt--gtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaag 333  Q
    ||||| |||||||||||||||| | |||||||||||||  |||||||||||| |||  |||||||||| |||||| |||||||||| ||| ||||||| |    
T  29706969 actcatattgagaaggttttcctcactaaaattttgttgtgtgtcattttacatttttgctaaagtgcatattttaagttcacggatgagagaaattatg 29706870  T
Q  334 caggcatttcccaacaatt 352  Q
     |||||||| |||||||||    
T  29706869 gaggcattttccaacaatt 29706851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 27642132 - 27642225
Alignment:
Q  176 tattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaatt 268  Q
    ||||||||||||||||||||||||  |||||||| |    ||  |||||| ||||| |||| ||||||||||||||||||| ||||| ||||||    
T  27642132 tattcccattattattatagtggaagtttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaatt 27642225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 101 - 331
Target Start/End: Complemental strand, 26752 - 26516
Alignment:
Q  101 atagtgagccaatttgtgagagttgtatctacaaattgagataca-----tagttaggtccacctgagggtgaag-atttgtattcccattattattata 194  Q
    |||||||||||||||||||||||  |   |||||||||||| | |     |||| || ||||||| |||||| || | |||||||| | |||| |||| |    
T  26752 atagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtgagatccacctaagggtggagtagttgtattctcgttatcattaga 26653  T
Q  195 gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtcattttacgtttccgct 294  Q
    |||||  ||||||||||  | ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  26652 gtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgttgtgttattttacgttttcgct 26553  T
Q  295 aaagtgcctattttgagttcacggaggagggaaatta 331  Q
    |||||| |||||||||||||||| |||||||| ||||    
T  26552 aaagtgtctattttgagttcacgaaggagggagatta 26516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 101 - 350
Target Start/End: Original strand, 41481548 - 41481816
Alignment:
Q  101 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 194  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  41481548 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 41481647  T
Q  195 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaatt-ttgttgtgtc-----------a 279  Q
    ||||| | ||||||||||  | ||||||||||||||||  |||| |||| ||||||||||||||||||||||||||| |  |||||||           |    
T  41481648 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgtttata 41481747  T
Q  280 ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacaa 350  Q
    ||| |||||||||||  |||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41481748 tttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaacaa 41481816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 349
Target Start/End: Original strand, 36167547 - 36167813
Alignment:
Q  101 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 194  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  36167547 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 36167646  T
Q  195 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgtt-gtgtcatt--------- 281  Q
    ||||| | ||||||||||  | |||||| |||||||||  |||| |||| ||||||||||||||||||||||||||| | || ||||||||             
T  36167647 gtggaagttttaagaggcccaagggtcc-gtggttttttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgtttata 36167745  T
Q  282 --ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 349  Q
      | ||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36167746 tttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 36167813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 344
Target Start/End: Complemental strand, 18951326 - 18951129
Alignment:
Q  157 acctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggt 252  Q
    |||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||| ||  |  |||| ||||||||||  |||| ||||||||||||||||    
T  18951326 acctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggt 18951227  T
Q  253 tttccacgctaaaattttgt--------tgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcc 344  Q
    |||||| ||||||||| |||          |   |||| | |||||||||  |||||||||||||||||||||||||||| |||||| ||||||||||||    
T  18951226 tttccatgctaaaattctgtgtcattacgcttatatttcatgtttccgct--agtgcctattttgagttcacggaggaggcaaattatgcaggcatttcc 18951129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 101 - 349
Target Start/End: Complemental strand, 25857395 - 25857131
Alignment:
Q  101 atagtgagccaatttgtgagagttgtatctacaaatt--gagatacat---agttaggtccacctgagggtgaagat-ttgtattcccattattattata 194  Q
    |||||||||||||||||||||||  |   ||||||||  |||||| ||   ||| || ||||||| | ||||||| | ||||||||||||||| ||||||    
T  25857395 atagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattata 25857296  T
Q  195 gtgga-gatttaagaggcttacgggtcccgtggtttttcctta-ctcacattgagaaggttttccacgctaaaattttgttgtgtc-----------att 281  Q
    ||||| | ||||||||||  | ||||||||||||||||||||  |||||||||||||||||||||||||||||||| |  ||||||           |||    
T  25857295 gtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaattct-ctgtgtcattacgcttatatt 25857197  T
Q  282 ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 349  Q
    | |||||||||||  |||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  25857196 tcacgtttccgct--agtgcctattttaagttcacggaggagggaaattatgcaggcatttcccaaca 25857131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 349
Target Start/End: Complemental strand, 4842857 - 4842648
Alignment:
Q  154 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 249  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||  | |||||| |||||||||  |||| |||||||||||||    
T  4842857 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaa 4842758  T
Q  250 ggttttccacgctaaaattttgtt-gtgtcatt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg 337  Q
    ||||||||||||||||||| | || ||||||||           | ||||||||||||  |||||||||||||||||||||||||||||||||| |||||    
T  4842757 ggttttccacgctaaaattctctttgtgtcattacacttatatttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcagg 4842660  T
Q  338 catttcccaaca 349  Q
    ||||||||||||    
T  4842659 catttcccaaca 4842648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 101 - 349
Target Start/End: Complemental strand, 4835840 - 4835575
Alignment:
Q  101 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 194  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||| ||||||||||| ||||||    
T  4835840 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattata 4835741  T
Q  195 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtc-----------at 280  Q
    ||||| | ||||||||||  | ||||||||||||||||  |||| |||||||||||||||||||||||||||||||| |  ||||||           ||    
T  4835740 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattct-ctgtgtcattacgtttatat 4835642  T
Q  281 tttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 349  Q
    || |||||||| ||  ||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  4835641 ttcacgtttccact--agtgcctattttgagttcatggaggagggaaattatgcaggcatttcccaaca 4835575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 154 - 281
Target Start/End: Complemental strand, 13465165 - 13465036
Alignment:
Q  154 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 250  Q
    ||||||||||||||||  | ||||||||||||||| ||||||||||| | ||||||||||  | |||||| ||||||||||| || ||||||||||||||    
T  13465165 tccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaag 13465066  T
Q  251 gttttccacgctaaaattttgttgtgtcatt 281  Q
    |||||||||||||||||||| ||||||||||    
T  13465065 gttttccacgctaaaatttt-ttgtgtcatt 13465036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 91 - 260
Target Start/End: Complemental strand, 8252853 - 8252686
Alignment:
Q  91 agagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagataca----tagttaggtccacctgagggtgaagatttgtattcccatta 186  Q
    |||||||||||||||||| |||||| ||| |||||||||||||||||||||||||    || ||| ||||| || | | ||||| ||||||||||| |||    
T  8252853 agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacataattaattaagtccatctaaagatgaagctttgtattcccgtta 8252754  T
Q  187 ttattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacg 260  Q
    |||||| | ||  || ||||||| |||||| ||||||      | |||||||||| ||||||||||||||||||    
T  8252753 ttattacattgaggagttaagagacttacgagtcccg------taccttactcacgttgagaaggttttccacg 8252686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 17845847 - 17845970
Alignment:
Q  156 cacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttt 254  Q
    ||||| ||||||||| | ||||||| ||||||| |||||||||||  |||||||||   |  ||||| ||||||||||||| ||||||||| ||||||||    
T  17845847 cacctaagggtgaagttgttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttt 17845946  T
Q  255 tccacgctaaaattttgttgtgtc 278  Q
    ||||| |||||||| | |||||||    
T  17845947 tccactctaaaattctcttgtgtc 17845970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 27341120 - 27341025
Alignment:
Q  173 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 268  Q
    ||||||| ||||||| ||| |||| ||  |||||||||   | |||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  27341120 ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt 27341025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 268
Target Start/End: Complemental strand, 24379487 - 24379370
Alignment:
Q  154 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 250  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||  |  | ||||||||||||||| || ||||||||||||||    
T  24379487 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaag 24379388  T
Q  251 gttttccacgctaaaatt 268  Q
    |||||||||| |||||||    
T  24379387 gttttccacgttaaaatt 24379370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 350
Target Start/End: Original strand, 24380113 - 24380164
Alignment:
Q  299 tgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacaa 350  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  24380113 tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaacaa 24380164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 38994218 - 38994151
Alignment:
Q  202 tttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 268  Q
    |||||||||||   |||||||||||||||||| || ||| |||||||||||||||||||| |||||||    
T  38994218 tttaagaggctcgagggtcccgtggtttttccctttctcgcattgagaaggttttccacgttaaaatt 38994151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 24379347 - 24379279
Alignment:
Q  279 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 349  Q
    ||||||||||||| |||  ||||||||||| |||||||||||||| ||||||| | || ||||| ||||||    
T  24379347 attttacgtttccacta--gtgcctattttaagttcacggaggagagaaattatgtagacattttccaaca 24379279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 349
Target Start/End: Original strand, 2727 - 2936
Alignment:
Q  154 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 249  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | ||||||||||||||||  |||| |||||||||||||    
T  2727 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa 2826  T
Q  250 ggttttccacgctaaaatt-ttgttgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg 337  Q
    ||||||||||||||||||| |  |||||||           |||| |||||||||||  |||| ||||||||||||||||||| |||||||||| ||| |    
T  2827 ggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgct--agtgtctattttgagttcacggagaagggaaattatgcatg 2924  T
Q  338 catttcccaaca 349  Q
    ||||||||||||    
T  2925 catttcccaaca 2936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 101 - 349
Target Start/End: Complemental strand, 9757480 - 9757212
Alignment:
Q  101 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 194  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  9757480 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 9757381  T
Q  195 gtgga---gatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaatt-ttgttgtgtc----------- 278  Q
    |||||     ||||||||||  | |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |  |||||||               
T  9757380 gtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttat 9757281  T
Q  279 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 349  Q
    |||| |||||||||||  |||||||||||||||||||||||||| |||||||| |||||||||| ||||||    
T  9757280 atttcacgtttccgct--agtgcctattttgagttcacggaggaaggaaattatgcaggcatttaccaaca 9757212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 37287069 - 37286972
Alignment:
Q  173 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatttt 270  Q
    ||||||||  |||||||||||||||||  ||||||| ||||| |||||||||| |||||||||  ||||||||||||||||||||| |||||||||||    
T  37287069 ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt 37286972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 268
Target Start/End: Complemental strand, 42683038 - 42682924
Alignment:
Q  156 cacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggtt 253  Q
    ||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||   | |||||||||| ||||||||| |||||||||||||||||    
T  42683038 cacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggtt 42682939  T
Q  254 ttccacgctaaaatt 268  Q
    ||||||||| |||||    
T  42682938 ttccacgctgaaatt 42682924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 349
Target Start/End: Complemental strand, 342404 - 342217
Alignment:
Q  173 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttt-ttcc-ttactcacattgagaaggttttccacgctaaaattt 269  Q
    ||||||||||||||| ||||||||||| | ||||||||||  | || ||||||||||| |||| || |||| |||||||||||||| ||||||||||||     
T  342404 ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaattc 342305  T
Q  270 tgttgtgtcatt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 349  Q
    | ||||||||||           | ||||||| ||||  ||||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  342304 t-ttgtgtcattacgcttatatttcacgtttctgcta--gtgcctattttgagttcacggaggaggaaaattatgcaggcattttccaaca 342217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 37037942 - 37038035
Alignment:
Q  173 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaa 266  Q
    |||||||| ||||||  |||||||| |  ||||||||||  | |||||||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  37037942 ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa 37038035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 37038074 - 37038108
Alignment:
Q  297 agtgcctattttgagttcacggaggagggaaatta 331  Q
    ||||||||||||||||||||||||||| |||||||    
T  37038074 agtgcctattttgagttcacggaggagagaaatta 37038108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University