View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_60 (Length: 357)
Name: NF6641_high_60
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_60 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 349
Target Start/End: Complemental strand, 38752804 - 38752475
Alignment:
| Q |
20 |
aagagagccagaaacaaccaaaaattcttacggccatgatgactggttctggttctccttgtggagcctgcaaattcttgaggagaaaatgtgttagagg |
119 |
Q |
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| T |
38752804 |
aagagagccagaaacaaccaaaaattcttacggccatgatgactggttctggttctccttgtggagcctgcaaattcttgaggagaaaatgtgttagagg |
38752705 |
T |
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| Q |
120 |
ttgtgtttttgcaccttacttttgccatgaacaaggtgctacccattttgcagctattcataaggtctttggtgcaagtaatgtttcaaagcttcttgca |
219 |
Q |
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| T |
38752704 |
ttgtatttttgcaccttacttttgccatgaacaaggtgctacccattttgcagctattcataaggtctttggtgcaagtaatgtttcaaagcttcttgca |
38752605 |
T |
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| Q |
220 |
cacctccctgtgaccgatcgttgtgaagctgcagtcacaatctcttatgaagctcaagctagacttcaagatccaatttatggatgtgttgcccatattt |
319 |
Q |
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| T |
38752604 |
cacctccctgtgaccgatcgttgtgaagctgcagtcacaatctcttatgaagctcaagctagacttcaagatccaatttatggatgtgttgcccatattt |
38752505 |
T |
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| Q |
320 |
ttgcactccaacaacaggtttgttcatctc |
349 |
Q |
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| T |
38752504 |
ttgcactccagcaacaggtttgttcatctc |
38752475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 66 - 340
Target Start/End: Original strand, 30903962 - 30904236
Alignment:
| Q |
66 |
ttctggttctccttgtggagcctgcaaattcttgaggagaaaatgtgttagaggttgtgtttttgcaccttacttttgccatgaacaaggtgctacccat |
165 |
Q |
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| T |
30903962 |
ttctggttctccttgtggagcttgcaaatttttgagaagaaaatgtataagaggttgtgtttttgcaccttatttttctcatgaacaaggtgctacacat |
30904061 |
T |
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| Q |
166 |
tttgcagctattcataaggtctttggtgcaagtaatgtttcaaagcttcttgcacacctccctgtgaccgatcgttgtgaagctgcagtcacaatctctt |
265 |
Q |
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||| |||| ||||||||||| ||||||||||| ||||| |||||||||||||| || |||||||| | ||||| || ||||| || || |||||||||| |
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| T |
30904062 |
ttttcagccattcataaggtttttggtgcaagcaatgtctcaaagcttcttgctcatctccctgtaagtgatcgctgcgaagccgctgttacaatctctt |
30904161 |
T |
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| Q |
266 |
atgaagctcaagctagacttcaagatccaatttatggatgtgttgcccatatttttgcactccaacaacaggttt |
340 |
Q |
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| T |
30904162 |
atgaagctcaagctagacttcaagatcctatttatggatgtgtttcacatatttttgccctacaacaacaggttt |
30904236 |
T |
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