View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_high_61 (Length: 355)

Name: NF6641_high_61
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_high_61
NF6641_high_61
[»] chr4 (4 HSPs)
chr4 (3-175)||(28725627-28725818)
chr4 (260-339)||(28725844-28725923)
chr4 (260-338)||(28736881-28736959)
chr4 (215-248)||(28725813-28725846)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 28725627 - 28725818
Alignment:
Q  3 atcaatcgtttcaaacatccttgttatgagtataaataaatctatagttttgattcattatttactttttgttgaaa----ctatag------------- 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    || ||                  
T  28725627 atcaatcgtttcaaacatccttgttatgagtataaataaatctatagttttgattcattatttactttttgttgaaaaaaactgtaattattaaattgaa 28725726  T
Q  86 --atttgttagtgctgaaaactaatggttaatatctttaatgtattttccctatcttcattgaacttgttttatatgagaaaaactcaaatc 175  Q
      |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28725727 gaatttgttagtgctgaaaactaatggttaatatctttaatgtatttttcctatcttcattgaacttgttttatatgagaaaaactcaaatc 28725818  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 28725844 - 28725923
Alignment:
Q  260 ctagtactgccagtaaaagaccaactgagcatggtaatttaaccaatatcatcgctattccttctcaaagaggccccaat 339  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28725844 ctagtactgtcagtaaaagaccaactgagcatggtaatttaaccaatatcatcgctattccttctcaaagagtccccaat 28725923  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 338
Target Start/End: Original strand, 28736881 - 28736959
Alignment:
Q  260 ctagtactgccagtaaaagaccaactgagcatggtaatttaaccaatatcatcgctattccttctcaaagaggccccaa 338  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||||||   |   | ||||||||||||||||||||||    
T  28736881 ctagtaccgtcagtaaaagaccaactgagcaaggtaatttaaccaatagtgttattgttccttctcaaagaggccccaa 28736959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 28725813 - 28725846
Alignment:
Q  215 caaatcaaaacaagagcagtaaagttataagcta 248  Q
    ||||||||||||||||||||||||||||||||||    
T  28725813 caaatcaaaacaagagcagtaaagttataagcta 28725846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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