View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_66 (Length: 334)
Name: NF6641_high_66
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_66 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 334
Target Start/End: Original strand, 33275278 - 33275599
Alignment:
| Q |
13 |
aatatcacttttatccaaaatatatcatataggaatgatttatcccttaacacttccatggccaacatgtgatcaatgccaagaacatgagtactcattg |
112 |
Q |
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| T |
33275278 |
aatatcacttttatccaaactatatcatataggaatgatttatcccttaacacttccatgcccaacatgtgatcaatgccaagaacatgagtactcattg |
33275377 |
T |
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| Q |
113 |
tccatatctagcttccatttccagatgtcagccacaccattcagcaagaaaatgctagacaacgaaagactagactcccacacatgttcctcctcccaaa |
212 |
Q |
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| T |
33275378 |
tccatatctagcttccatttccagatgtcagccacaccattcagcaagaaaatgctagacaacgagagactagactcccacacatgttcctcctcccaaa |
33275477 |
T |
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| Q |
213 |
ctaacaacatcccccgccacttccacccatcttcctatgtgccccaagctaaaacacaaatctcagccaccatcgtaaacttgtttttcgcaaagtcaaa |
312 |
Q |
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| T |
33275478 |
ctaacaacctcccccgccactttcacccatcttcccatgtgccccaagctaaaacacatatctcagccaccatcgtaaacttgtttttcgcaaagtcaaa |
33275577 |
T |
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| Q |
313 |
tatttcctaaatatgaaatatt |
334 |
Q |
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| T |
33275578 |
tatttcctaaatatgaaatatt |
33275599 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 50762801 - 50762865
Alignment:
| Q |
15 |
tatcacttttatccaaaatatatcatataggaatgatttatcccttaacacttccatggccaaca |
79 |
Q |
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| T |
50762801 |
tatcacttttatccaaacaatatcatagaggattgatctatcctttgacatttccatgaccaaca |
50762865 |
T |
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