View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_69 (Length: 326)
Name: NF6641_high_69
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_69 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 14608799 - 14608505
Alignment:
| Q |
13 |
aatatttccagcacaaattgaacatttagatcctttagcccctgccatttgaggatgagtcacctcagaatcaatcactctatccattagatgagctctc |
112 |
Q |
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| T |
14608799 |
aatatttccagcacaaattgaacatttagatcctttagcccctgccatttgaggatgagtcacctcagaatcaatcactctatccattagatgagctctt |
14608700 |
T |
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| Q |
113 |
gttacactattgaatcctccggtaaacaaagaattggaaacatattgttcttcagctttcattgcaacagaattaccatccattggttggttatcaggag |
212 |
Q |
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| T |
14608699 |
gttacactattgaatcctccggtaaacaaagaattggaaacatattgttcttcagctttcattgcaacagaattaccatccattggttggttatcaggag |
14608600 |
T |
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| Q |
213 |
tgggaggaatatgaacggtataattcatataatctcctgctacatctgtagacatttcaatgtcttcttttgacaaattaacatatcttccactt |
307 |
Q |
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| T |
14608599 |
tgggaggaatatgaacggtataattcatataatctcctgctacatctgtagacatttcaatgtcttcttttgacaaattaacatatcttccactt |
14608505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 24 - 306
Target Start/End: Original strand, 14599667 - 14599949
Alignment:
| Q |
24 |
cacaaattgaacatttagatcctttagcccctgccatttgaggatgagtcacctcagaatcaatcactctatccattagatgagctctcgttacactatt |
123 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| || | ||||||||||||||||| ||||||||||| |
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| T |
14599667 |
cacaaattgaacaagaagatcctttagcccctgccatttgaggatgagttacttcagaatcaataaccttgtccattagatgagctcttgttacactatt |
14599766 |
T |
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| Q |
124 |
gaatcctccggtaaacaaagaattggaaacatattgttcttcagctttcattgcaacagaattaccatccattggttggttatcaggagtgggaggaata |
223 |
Q |
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| T |
14599767 |
gaatcctccggtaaataaagaattggaaacatattgttcttcagctttcattgcaacagaagtaccatccattggttggttatcaggagtgggaggaata |
14599866 |
T |
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| Q |
224 |
tgaacggtataattcatataatctcctgctacatctgtagacatttcaatgtcttcttttgacaaattaacatatcttccact |
306 |
Q |
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||||| ||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
14599867 |
tgaacagtataattcatataatcacctgatacatctgaagacatttcaatgtcttcttttgacaaactaacatatctcccact |
14599949 |
T |
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