View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6641_high_7 (Length: 641)
Name: NF6641_high_7
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_7 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 564; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 18 - 641
Target Start/End: Original strand, 33810940 - 33811562
Alignment:
| Q |
18 |
atcactgaaggttgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaagttatgttctctattgtgatagtcaaagtg |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33810940 |
atcactgaaggctgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaatttatgttctctattgtgatagtcaaagtg |
33811039 |
T |
|
| Q |
118 |
caattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
33811040 |
caattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggattcgtgatgtgttggagaataaactgctgca |
33811139 |
T |
|
| Q |
218 |
aatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaagagaagatagagttttgtaaagaggctgcaggcatagca |
317 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| | ||| |
|
|
| T |
33811140 |
aatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaagagaagatagagttttgtaaacaagctgcaggcttggca |
33811239 |
T |
|
| Q |
318 |
gcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggtttccagccacaatagtaacaataatgcatcaattggaaatg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33811240 |
gcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggtttccagccacaatagtaacaataatgcatcaatgggaaatg |
33811339 |
T |
|
| Q |
418 |
ttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctaccatgtcagcaacaaattgacaaacttggcaattggtaacta |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33811340 |
ttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctaccatgtcagtaacaaattgacaaacttggcaattggtaacta |
33811439 |
T |
|
| Q |
518 |
ttgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggttcaaaaccctctataaatagagaagagtttcagcaatgaa |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811440 |
ttgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggttcaaaaccctctataaatagagaagagtttcagcaatgaa |
33811539 |
T |
|
| Q |
618 |
accacaccacaacataatcctcac |
641 |
Q |
| |
|
| |||||||||||| ||||||||| |
|
|
| T |
33811540 |
a-cacaccacaacacaatcctcac |
33811562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 18 - 641
Target Start/End: Original strand, 33815858 - 33816480
Alignment:
| Q |
18 |
atcactgaaggttgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaagttatgttctctattgtgatagtcaaagtg |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33815858 |
atcactgaaggctgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaatttatgttctctattgtgatagtcaaagtg |
33815957 |
T |
|
| Q |
118 |
caattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
33815958 |
caattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggattcgtgatgtgttggagaataaactgctgca |
33816057 |
T |
|
| Q |
218 |
aatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaagagaagatagagttttgtaaagaggctgcaggcatagca |
317 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| | ||| |
|
|
| T |
33816058 |
aatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaagagaagatagagttttgtaaacaagctgcaggcttggca |
33816157 |
T |
|
| Q |
318 |
gcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggtttccagccacaatagtaacaataatgcatcaattggaaatg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33816158 |
gcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggtttccagccacaatagtaacaataatgcatcaatgggaaatg |
33816257 |
T |
|
| Q |
418 |
ttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctaccatgtcagcaacaaattgacaaacttggcaattggtaacta |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33816258 |
ttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctaccatgtcagtaacaaattgacaaacttggcaattggtaacta |
33816357 |
T |
|
| Q |
518 |
ttgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggttcaaaaccctctataaatagagaagagtttcagcaatgaa |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816358 |
ttgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggttcaaaaccctctataaatagagaagagtttcagcaatgaa |
33816457 |
T |
|
| Q |
618 |
accacaccacaacataatcctcac |
641 |
Q |
| |
|
| |||||||||||| ||||||||| |
|
|
| T |
33816458 |
a-cacaccacaacacaatcctcac |
33816480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 370 - 641
Target Start/End: Original strand, 33807638 - 33807908
Alignment:
| Q |
370 |
tgttggtttccagccacaatagtaacaataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807638 |
tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
33807737 |
T |
|
| Q |
470 |
attctaccatgtcagcaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
569 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807738 |
attctaccatgtcagtaacaaattgacaaacttggcaatgggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
33807837 |
T |
|
| Q |
570 |
cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaaccacaccacaacataatcctcac |
641 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
33807838 |
cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaa-cacaccacaacacaatcctcac |
33807908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 4836523 - 4836172
Alignment:
| Q |
18 |
atcactgaaggttgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaagttatgttctctattgtgatagtcaaagtg |
117 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836523 |
atcactgaaggttgtaaggagatcctatggatgaagaagtttctacaagagttatgccagaatcaagaaagttatgttctctattgtgatagtcaaagtg |
4836424 |
T |
|
| Q |
118 |
caattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836423 |
caattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgca |
4836324 |
T |
|
| Q |
218 |
aatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaagagaagatagagttttgtaaagaggctgcaggcatagca |
317 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| |||||||||||| | ||| | |||||||||||||||||||| ||| | ||||| || || | | |
|
|
| T |
4836323 |
aatagagaaaattcacacaaatgagaatggagcagacatgatgacaaaaccgctaccgaaagagaagatagagttttgcaaacaagctgctggaatggta |
4836224 |
T |
|
| Q |
318 |
gcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgt |
372 |
Q |
| |
|
|||||||||||||||| ||||| || |||| ||||||||||||||||||||| |
|
|
| T |
4836223 |
gcaaccccaaactaat-taagg--cattcccctatggctggagggggagaattgt |
4836172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 156 - 334
Target Start/End: Complemental strand, 24380105 - 24379927
Alignment:
| Q |
156 |
tcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagata |
255 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||||||||| |||| |||| || || || |||||||| ||||||||||| | |||||||| || | |
|
|
| T |
24380105 |
tcaaaacacaatgatgtgaggtatcactggattcgtgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaataagaatggagccgaca |
24380006 |
T |
|
| Q |
256 |
tgatgacaaaagctctatcaaaagagaagatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatc |
334 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||| | ||||| || | |||||||||||||||||||| |
|
|
| T |
24380005 |
tgatgacaaaacctctatcaaaagagaagatagagttttgcaaacaagctgctggattggcagcaaccccaaactaatc |
24379927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 54968189 - 54967873
Alignment:
| Q |
18 |
atcactgaaggttgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaagttatgttctctattgtgatagtcaaagtg |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || ||||| || | |
|
|
| T |
54968189 |
atcactgaaggttgtaaggagatcctgtggatgaagaagttcctgcaagagttaggccaaagtcaagaaagttatgttctctattgcgacagtcagagcg |
54968090 |
T |
|
| Q |
118 |
caattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgca |
217 |
Q |
| |
|
||||||| ||||||||||| || |||||||| || || ||||||||||| |||||||||||||| ||||| ||||||||||| || | |||| || || | |
|
|
| T |
54968089 |
caattcatctcagcaagaactcaacataccactccagatcaaaacacattgatgtgaggtatcactggattcgtgatgtgttggaaagtaaattgttgaa |
54967990 |
T |
|
| Q |
218 |
aatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaagagaagatagagttttgtaaagaggctgcaggcatagca |
317 |
Q |
| |
|
| |||||||| ||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||| || | ||| |
|
|
| T |
54967989 |
agtagagaaagttcacaccaatgagaacggagcagatatgatgacaaaagctctaccaaaagagaagatagagttttgcaaacaagctgctggattggca |
54967890 |
T |
|
| Q |
318 |
gcaaccccaaactaatc |
334 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
54967889 |
gcaaccccaaattaatc |
54967873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 553 - 633
Target Start/End: Original strand, 50603003 - 50603083
Alignment:
| Q |
553 |
gaaccaagcatttaatgcacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaaccacaccacaacata |
633 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||||||| |||||||| | || |||||||||||||| |
|
|
| T |
50603003 |
gaaccaagcatttaatgcttacggttcatttctctctataaatagagaagagcttcagcaaagcaaacacaccacaacata |
50603083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 153; Significance: 9e-81; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 1958 - 2274
Alignment:
| Q |
18 |
atcactgaaggttgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaagttatgttctctattgtgatagtcaaagtg |
117 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| || |||||||| | |
|
|
| T |
1958 |
atcactgaaggttgtaaggagatcctatggatgaagaagttcctacaagagttaggccaaaatcaagaaagctatgttctctattgcgacagtcaaagcg |
2057 |
T |
|
| Q |
118 |
caattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgca |
217 |
Q |
| |
|
| ||||| ||||||||||| || ||||| || || || |||||||| || |||||||||||||| ||||| ||||||||||| |||| |||| || || | |
|
|
| T |
2058 |
cgattcatctcagcaagaactcaacatatcactccagatcaaaacatattgatgtgaggtatcactggattcgtgatgtgttggagagtaaattgttgaa |
2157 |
T |
|
| Q |
218 |
aatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaagagaagatagagttttgtaaagaggctgcaggcatagca |
317 |
Q |
| |
|
| |||||||| ||||||||||||| ||||||||||| |||||||| ||| ||||| ||||||||||||| |||||||| ||| | ||||| || | ||| |
|
|
| T |
2158 |
agtagagaaagttcacaccaatgagaatggagcagacatgatgaccaaacctctaccaaaagagaagattgagttttgcaaacaagctgctggattggca |
2257 |
T |
|
| Q |
318 |
gcaaccccaaactaatc |
334 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2258 |
gcaaccccaaactaatc |
2274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 3e-74; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 22982118 - 22981841
Alignment:
| Q |
18 |
atcactgaaggttgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaagttatgttctctattgtgatagtcaaagtg |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || ||||| |||| |
|
|
| T |
22982118 |
atcactgaaggttgtaaggagatcatgtggatgaagaagttcctgcaagagttaggccagaatcaaaaaagctatgttctctattgcgacagtcagagtg |
22982019 |
T |
|
| Q |
118 |
caattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgca |
217 |
Q |
| |
|
| ||||| ||||||||||| ||||||||||| || || || |||||||| || |||||||| || || || ||||||||| |||| |||| || || | |
|
|
| T |
22982018 |
cgattcatctcagcaagaactcgacataccactctagatcgaaacacattgacgtgaggtaccactgtattaatgatgtgttggagagtaaattgttgaa |
22981919 |
T |
|
| Q |
218 |
aatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaagagaagatagagttttg |
295 |
Q |
| |
|
| |||||||| ||||||||||||| ||||||||||| |||||||||||| ||||| ||||||| ||||| |||||||| |
|
|
| T |
22981918 |
agtagagaaagttcacaccaatgagaatggagcagacatgatgacaaaacctctaccaaaagaaaagattgagttttg |
22981841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 23806290 - 23806567
Alignment:
| Q |
18 |
atcactgaaggttgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaagttatgttctctattgtgatagtcaaagtg |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || ||||| |||| |
|
|
| T |
23806290 |
atcactgaaggttgtaaggagatcatgtggatgaagaagttcctgcaagagttaggccagaatcaaaaaagctatgttctctattgcgacagtcagagtg |
23806389 |
T |
|
| Q |
118 |
caattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgca |
217 |
Q |
| |
|
| ||||| ||||||||||| ||||||||||| || || || |||||||| || |||||||| || || || ||||||||| |||| |||| || || | |
|
|
| T |
23806390 |
cgattcatctcagcaagaactcgacataccactctagatcgaaacacattgacgtgaggtaccactgtattaatgatgtgttggagagtaaattgttgaa |
23806489 |
T |
|
| Q |
218 |
aatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaagagaagatagagttttg |
295 |
Q |
| |
|
| |||||||| ||||||||||||| ||||||||||| |||||||||||| ||||| ||||||| ||||| |||||||| |
|
|
| T |
23806490 |
agtagagaaagttcacaccaatgagaatggagcagacatgatgacaaaacctctaccaaaagaaaagattgagttttg |
23806567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 1105201 - 1105112
Alignment:
| Q |
141 |
acataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaatt |
230 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||| || ||||||| |||| ||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
1105201 |
acataccatttaagatcaaaacacatcaatgtaagaaatcattgaatacatgacgtgttagagaataaactgctttaaatagagaaaatt |
1105112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 575 - 631
Target Start/End: Complemental strand, 31152298 - 31152242
Alignment:
| Q |
575 |
ggttcaaaaccctctataaatagagaagagtttcagcaatgaaaccacaccacaaca |
631 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |||||||| | || |||||||||||| |
|
|
| T |
31152298 |
ggttcaaatctctctataaatagagaagagcttcagcaaagcaatcacaccacaaca |
31152242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 375
Target Start/End: Complemental strand, 1105101 - 1104988
Alignment:
| Q |
262 |
caaaagctctatcaaaagagaagatagagttttgtaaagaggctgcaggcatagcagcaaccccaaactaatctaaggatagtttccctttggctggagg |
361 |
Q |
| |
|
||||||||||| ||||| ||||| |||| |||| ||||| ||||||| | |||||| |||||| ||||||||| ||||||| | ||| ||| |||| |
|
|
| T |
1105101 |
caaaagctctaccaaaaaagaagttagatttttataaagcaattgcaggcttgacagcaatcccaaattaatctaagtatagttttcgtttagctagagg |
1105002 |
T |
|
| Q |
362 |
gggagaattgttgg |
375 |
Q |
| |
|
| || ||||||||| |
|
|
| T |
1105001 |
gagataattgttgg |
1104988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 25003788 - 25003452
Alignment:
| Q |
18 |
atcactgaaggttgtaaggagatgatgtggatgaagaagttcctgcaagagttaggccagaatcaagaaagttatgttctctattgtgatagtcaaagtg |
117 |
Q |
| |
|
|||||| | |||||||||||||| |||||||||||||||| ||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
25003788 |
atcactaacggttgtaaggagatcccgtggatgaagaagttcatgcaagagtcaggcctgaatcaacaaagttatgttccctattgtgatagtcaaagtg |
25003689 |
T |
|
| Q |
118 |
caattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgca |
217 |
Q |
| |
|
||||||||||||| || || |||||||| || |||||||| |||||||| ||||||||||| | |||||||||||||||| | ||| ||||| |
|
|
| T |
25003688 |
caattcacctcagaaataactcgacata-caatcaaggtc-aaacacatagatgtgaggta---------atgtgatgtgttagagaa-agactactgca |
25003601 |
T |
|
| Q |
218 |
aatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaagagaagatagagttttgtaaagaggctgcaggc-atagc |
316 |
Q |
| |
|
|| |||||||| ||||| ||||||| || || |||||||||||||| ||||| |||| || | || |||||||||| || | || ||| | |
|
|
| T |
25003600 |
aaaagagaaaa---acaccgatgacaaagggacaaatatgatgacaaaaactctaccaaatga------aaaggtttgtaaagaatatgaaagctata-c |
25003511 |
T |
|
| Q |
317 |
agcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttgg |
375 |
Q |
| |
|
||||||||||||||||| | | |||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
25003510 |
agcaaccccaaactaatttgaagatattttccctttggctggagggagagaattgttgg |
25003452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 346 - 376
Target Start/End: Original strand, 14178325 - 14178355
Alignment:
| Q |
346 |
tccctttggctggagggggagaattgttggt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14178325 |
tccctttggctggagggggagaattgttggt |
14178355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 375
Target Start/End: Complemental strand, 28607548 - 28607519
Alignment:
| Q |
346 |
tccctttggctggagggggagaattgttgg |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28607548 |
tccctttggctggagggggagaattgttgg |
28607519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 375
Target Start/End: Original strand, 12935055 - 12935084
Alignment:
| Q |
346 |
tccctttggctggagggggagaattgttgg |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12935055 |
tccctttggctggagggggagaattgttgg |
12935084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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