View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_70 (Length: 322)
Name: NF6641_high_70
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_70 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 32032016 - 32032305
Alignment:
| Q |
16 |
atgtaccaaggattgtaagtgtgttgggtatttctaccacaaggataactcaaggtgttggaaagcttatgatcttcaaacccttactaaagtagaaaat |
115 |
Q |
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| T |
32032016 |
atgtaccaaggattgtaagtgtgttgggtatttctaccacaaggataactcaaggtgttggaaagcttatgatcttcaaacccttactaaagtagaaaat |
32032115 |
T |
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| Q |
116 |
actacacacgtgggttttattaaggttcctaataagtagtaagataagcttagatttctctttgggaaggtcttggtattgtattttaattgtatcaatt |
215 |
Q |
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| T |
32032116 |
actacacacgtgggttttattaaggttcctaataagtagtaagataagcttagatttctctttgggaaggtcttggtattgtattttaattgtatcaatt |
32032215 |
T |
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| Q |
216 |
taatatagttatttcctactagtggttttagattgcaataaagttgtcgttatctctctgctctccacttggagaaggagatgtaatatt |
305 |
Q |
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| T |
32032216 |
taatatagttatttcctactagtggttttagattgcaataaagttgtcgttatctctctgctctccacttggagaaggagatgtaatatt |
32032305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 32065156 - 32065466
Alignment:
| Q |
16 |
atgtaccaaggattgtaagtgtgttgggtatttctaccacaaggataactcaaggtgttggaaagcttatgatcttcaaacccttactaaagtagaaaat |
115 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||| | ||||||||||||| |||||||||||||||||| ||||||| ||| ||||| |
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| T |
32065156 |
atgtaccaatgattgtaagtgtgttgggtatttctaccataaggatgaatcaaggtgttggatagcttatgatcttcaaactcttactagagttcaaaat |
32065255 |
T |
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| Q |
116 |
actacacacgtgggttttattaaggttcctaataagtagtaagataagcttagatttctctttgggaaggtc---------------------ttggtat |
194 |
Q |
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| T |
32065256 |
accacacatgtgggttatattaaggtgcctaataagtaataagataagcttagatttttccatgggaaggtcttggtatttttttttttttttttggtat |
32065355 |
T |
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| Q |
195 |
tgtattttaattgtatcaatttaatatagttatttcctactagtggttttagattgcaataaagttgtcg-ttatctctctgctctccacttggagaagg |
293 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||| |||||||| |||||||||||||| | |||||||| || ||||||| ||||||||| |
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| T |
32065356 |
tgtattttaattgtatcaatttaattttgttatttcctactagttgttttagaatgcaataaagttgtggtttatctctttgttctccacgtggagaagg |
32065455 |
T |
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| Q |
294 |
agatgtaatat |
304 |
Q |
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| T |
32065456 |
acttgtaatat |
32065466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 32078727 - 32078797
Alignment:
| Q |
232 |
tactagtggttttagattgcaataaagttgtcgttatctctctgctctccacttggagaaggagatgtaatatt |
305 |
Q |
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|||||||||||||||||||||||| ||||| ||| | |||||| |||| ||||||||||||| |||||||||| |
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| T |
32078727 |
tactagtggttttagattgcaatatagttg--gtt-tgtctctgttctctacttggagaaggacatgtaatatt |
32078797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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