View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_71 (Length: 318)
Name: NF6641_high_71
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_71 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 37077012 - 37076839
Alignment:
| Q |
15 |
caaaggtggatctagtttgttagaaagttttacaatatgcccaagatgggcgtcaaagtttcggtctagaacgcgatcctagaatttggcccttgtgaag |
114 |
Q |
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| T |
37077012 |
caaaggtggatctagtttgttagaaagttttacaataagcccaagatgggcgtcaaagtttcggtctagaacgcgatcctagaatttggcccttgtgaag |
37076913 |
T |
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| Q |
115 |
gggtggttgtctagagttttttaggtgtgtactaaatgtaatctcttaccctgg-aaaaaagttcctcgatatata |
189 |
Q |
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| T |
37076912 |
gggtggttgtc--gagttttttaggtgtgtactaaatgtaatctcttatccaggaaaaaaagttcctcgatatata |
37076839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 37076656 - 37076542
Alignment:
| Q |
183 |
atatataatggcttgtctaaagtcgccttatgagcctccccccaatcatttccaaacccaaatccataagagggggatcccaaggaatattttattttga |
282 |
Q |
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||||||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37076656 |
atatataataacttgttttaagtcgccttatgagcctcccc--aatcatttccaaacccaaatccataagagggggatcccaaggaatattttattttga |
37076559 |
T |
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| Q |
283 |
catgccctttctctatt |
299 |
Q |
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||||||||||||||||| |
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| T |
37076558 |
catgccctttctctatt |
37076542 |
T |
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