View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_72 (Length: 317)
Name: NF6641_high_72
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_72 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 34297804 - 34297522
Alignment:
| Q |
13 |
atgaaggtgaaacatttgataatgaagacctctttgcaccagtttgagtttgaaggaatcacattcatgctaaacagctgccctaatctagagcatctca |
112 |
Q |
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| T |
34297804 |
atgaaggtgaaacatatgataatgaagacctctttgcaccagtttgagttttagggaatcacattcatgctaaacagctgccccaatcttgagcatctca |
34297705 |
T |
|
| Q |
113 |
caattgaaattattgagaaaagatatatgaatgtaagtattacaaaaatttaattttctttaaatgattttctgtacacatgttatatagatttaannnn |
212 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||| |||| ||||||||||||||||||| |
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| T |
34297704 |
caattgaaattgttgagaaaagatatatgaatgtaagtaatac-aaaatttaattttttttaaatgatttgctgt--acatgttatatagatttaatttt |
34297608 |
T |
|
| Q |
213 |
nnnacagggtatatattataagaatttgatttgtatacattaatgtcggcataaactatttttatacatgtatctgataatatttc |
298 |
Q |
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| T |
34297607 |
tttacagggtatatattataagaatttgatttgtatacattaatgtcggcataaactatttttatacatgcatctgataatatttc |
34297522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 34288501 - 34288220
Alignment:
| Q |
13 |
atgaaggtgaaacatttgataatgaagacctctttgcaccagtttgagtttgaaggaatcacattcatgctaaacagctgccctaatctagagcatctca |
112 |
Q |
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||||||||||||||||||||||||||||||| |||||||| | |||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||||| |
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| T |
34288501 |
atgaaggtgaaacatttgataatgaagacctttttgcacccgcttgagtttgagggaatcgcattcatgctaaagagctgccctaacctagagcatctca |
34288402 |
T |
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| Q |
113 |
caattgaaattattgagaaaagatatatgaatgtaagtattacaaaaatttaattttctttaaatgattttctgtacacatgttatatagatttaannnn |
212 |
Q |
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| T |
34288401 |
caattgaaattgttgagaaaaaatatatgaatgtaagtattacaaaaatttaatttgatttgaatgatttggtgt--atatgttatatagatttaatttt |
34288304 |
T |
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| Q |
213 |
nnnacagggtatatattataagaatttgatttgtatacattaatgtcggcataaactatttttatacatgtatctgataatatt |
296 |
Q |
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| |||| ||||||||||||||||| |||||||||||| |||||||||||||| | ||||||||||| |||||||| ||||| |
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| T |
34288303 |
ttaagagggcatatattataagaatttaatttgtatacatcaatgtcggcataaattgtttttatacatttatctgattatatt |
34288220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 34282089 - 34281810
Alignment:
| Q |
14 |
tgaaggtgaaacatttgataatgaagacctctttgcaccagtttgagtttgaaggaatcacattcatgctaaacagctgccctaatctagagcatctcac |
113 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||| ||||||| | ||||||||| ||||||| || |||||||| ||||| ||||| | |
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| T |
34282089 |
tgaaggtgaaacatttgataatgaagacctctttacattagtttaagtttgaggaaatcacatttatgctaacgagttgccctaacttagagtatctcgc |
34281990 |
T |
|
| Q |
114 |
aattgaaattattgagaaaagatatatgaatgtaagtattacaaaaatttaattttctttaaatgattttctgtacacatgttatatagatttaannnnn |
213 |
Q |
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|||||||||| |||| ||| ||||||||| ||||||||||||||| ||||||||| |||||||||||| || | ||||||||||||||||| |
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| T |
34281989 |
aattgaaattgttgaagaaaaatatatgaaggtaagtattacaaaattttaatttt-tttaaatgattt--gatatatatgttatatagatttaattttt |
34281893 |
T |
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| Q |
214 |
nnacagggtatatattataagaatttgatttgtatacattaatgtcggcataaactatttttatacatgtatctgataatatttc |
298 |
Q |
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||| ||||||||||||||||| |||||| ||||||||||| | | ||||||||||||||||||||||||||| ||||||| |
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| T |
34281892 |
tt-gaggaaatatattataagaatttaatttgt-tacattaatgttgacgtaaactatttttatacatgtatctgattatatttc |
34281810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 28249124 - 28248981
Alignment:
| Q |
25 |
catttgataatgaagacctctttgcaccagtttgagtttgaaggaatcacattcatgctaaacagctgccctaatctagagcatctcacaattgaaatta |
124 |
Q |
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|||||||||||||||||| |||||||||| |||||||||| ||| | | || ||||||| ||||||||| | |||||| |||||||||||||||| |
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| T |
28249124 |
catttgataatgaagaccgctttgcaccattttgagtttgtgggagtatcttttatgctaagaagctgcccttacttagagcgtctcacaattgaaattg |
28249025 |
T |
|
| Q |
125 |
ttgagaaaagatatatgaatgtaagtattacaaaaatttaattt |
168 |
Q |
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|||| ||||| ||| ||||||||||||| |||||| |||| |
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| T |
28249024 |
ttgacgaaagacgcatgtttgtaagtattacataaatttgattt |
28248981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 10330966 - 10330846
Alignment:
| Q |
13 |
atgaaggtgaaacatttgataatgaagacctctttgcaccagtttgagtttgaaggaatcacattcatgctaaacagctgccctaatctagagcatctca |
112 |
Q |
| |
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|||| |||||| ||||||||||||||||| |||||||| | ||||||||| |||||| ||||||||||||| || ||||| | |||| | ||||| |
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| T |
10330966 |
atgagggtgaagcatttgataatgaagactgctttgcacaaatttgagtttatgggaatctcattcatgctaaagagttgccccgacttagaacgtctca |
10330867 |
T |
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| Q |
113 |
caattgaaattattgagaaaa |
133 |
Q |
| |
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||||||||||| |||| |||| |
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| T |
10330866 |
caattgaaattgttgataaaa |
10330846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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