View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_high_77 (Length: 296)

Name: NF6641_high_77
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_high_77
NF6641_high_77
[»] chr8 (1 HSPs)
chr8 (10-296)||(12507205-12507491)


Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 10 - 296
Target Start/End: Original strand, 12507205 - 12507491
Alignment:
Q  10 attattctctcaaatgctcaatagatccaaaaagacaccacgtgctataaagagcctaaagtgaaatgataataacatagttgcaaaaaataaataaata 109  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12507205 attattctctcaaatgctcaatagatccaaaaatacaccacgtgctataaagagcctaaagtgaaatgataataacatagttgcaaaaaataaataaata 12507304  T
Q  110 aagatattaattatgctctttaagtaaaaagtattgccaatatattttcattccaaagatgtttaattacaatcacaaatatactttggcatatctatct 209  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12507305 aaaatattaattatgctctttaagtaaaaagtattgccaatatattttcattccaaagatgtttaattacaatcacaaatatactttggcatatctatct 12507404  T
Q  210 atataatttgcagcaactcaaattaacatagttgcatccaagactttacatataaaatcgatttgaaaagagagttcatttttcagc 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12507405 atataatttgcagcaactcaaattaacatagttgcatccaagactttacatataaaatcgatttgaaatgagagttcatttttcagc 12507491  T

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