View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_high_78 (Length: 293)

Name: NF6641_high_78
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_high_78
NF6641_high_78
[»] chr7 (1 HSPs)
chr7 (1-293)||(18515788-18516080)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 18516080 - 18515788
Alignment:
Q  1 taacttatggttatatcataagctatttcccaaagatctgttaaacagttctacaagtaataatataaaagtgatcataagttgtttctctcatctgctg 100  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||    
T  18516080 taacttatgggcatatcataagctatttcccaaagatctgttaaacagttctacaagtaataagctaaaagtgatcataagctgtttctctcatctgctg 18515981  T
Q  101 cgtgtttcaaatgatgtatcaaattaacaagttattttcatgcattttttcaggaatttgttaataacttttagggttacactttcttgaagttgaacta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18515980 cgtgtttcaaatgatgtatcaaattaacaagttattttcatgcattttttcaggaatttgttaataacttttagggttacactttcttgaagttgaactg 18515881  T
Q  201 ctgtggtgctgttcgttgtgatgaatatccgtcctcatcctccgcccagtgctgcggatccatcggcagcggtaatcttcctccctgatgatg 293  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  18515880 ctgtggtgctgttcgttgtgatgaatatccttcctcatcctccgcccagtgctgcggatccatcggcagtggtaatcttcctccccgatgatg 18515788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University