View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6641_high_8 (Length: 631)

Name: NF6641_high_8
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6641_high_8
NF6641_high_8
[»] chr6 (4 HSPs)
chr6 (214-617)||(179660-180053)
chr6 (86-220)||(27444833-27444967)
chr6 (47-217)||(20909982-20910155)
chr6 (47-217)||(20924430-20924603)
[»] chr7 (1 HSPs)
chr7 (18-220)||(18940018-18940219)
[»] chr2 (1 HSPs)
chr2 (47-220)||(7828428-7828600)
[»] chr3 (6 HSPs)
chr3 (86-217)||(53689760-53689890)
chr3 (86-217)||(52311008-52311138)
chr3 (119-196)||(12537670-12537746)
chr3 (86-220)||(31688571-31688705)
chr3 (86-220)||(31911871-31912005)
chr3 (86-220)||(31945519-31945653)
[»] scaffold0096 (1 HSPs)
scaffold0096 (119-196)||(28836-28912)
[»] scaffold0003 (2 HSPs)
scaffold0003 (86-220)||(42391-42525)
scaffold0003 (86-220)||(35720-35854)
[»] chr8 (1 HSPs)
chr8 (47-217)||(42313099-42313271)
[»] chr1 (1 HSPs)
chr1 (86-217)||(41326913-41327047)


Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 214 - 617
Target Start/End: Original strand, 179660 - 180053
Alignment:
Q  214 aattgatatgtagttgtgagagtggatctacacccacagttgaaaatcaattgaccaattaggatgctatcatgatatgcttctatcatatatccaaaat 313  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  179660 aattgatatgtagttgtgagagtggatctacacccacagttcaaaatcaattgaccaattaggatgctatcatgatatgcttctatcatatatccaaaat 179759  T
Q  314 taagttaatctaaacggcccccaagtctaacatgtcaaacttttgaaaatgattagattaaattttaaagtaccttctaaaaataaaaataagtaaacta 413  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  179760 taagttaatctaaacggcccctaagtctaacatgccaaacttttgaaaatgattagattaaattttaaagtaccttctaaaaataaaaataagtaaacta 179859  T
Q  414 tgatttattgttcctgttaggtataggtatgaagctcaattgctttgaattgatttgaccttgattaaaatttactaaactcaaccactacacttggtat 513  Q
     ||||||||||||||||||||||||||||||||||||||||||          ||||||||||||| ||||||||||||||| |||||| ||||||||||    
T  179860 cgatttattgttcctgttaggtataggtatgaagctcaattgc----------tttgaccttgattcaaatttactaaactccaccactgcacttggtat 179949  T
Q  514 ggccaagttcattgagataagaaatcgtattaattattgattgaattgaaatcttatccttatcctttttaaaccattttagcatattcttactacagta 613  Q
    | |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  179950 gaccaatttcattgagataagaaatcgtattagttattgattgaattgaaatcttatccttatcctttttaaaccagtttagcatattcttactacagta 180049  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 27444967 - 27444833
Alignment:
Q  86 aaaaatacataatctcatgctagaaattgtataaaacagaaactcacaaccccgtttagttcttcaattatttttaacccaaagataaaaacttttcaaa 185  Q
    ||||| |||||||| |||  |||||||| ||||||||| ||||||||||||||||| |||||||||| |||||| || |  ||| ||||||   || |||    
T  27444967 aaaaagacataatcgcatattagaaattatataaaacaaaaactcacaaccccgttaagttcttcaactattttgaa-ctgaagctaaaaaaaattaaaa 27444869  T
Q  186 acaaaaattaac-aacgaccaatcgagcaaattgat 220  Q
    |||||||||||| || ||  ||||||||||||||||    
T  27444868 acaaaaattaacaaatgatgaatcgagcaaattgat 27444833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 20909982 - 20910155
Alignment:
Q  47 gtgaaataaagagcttaacatcatgaacaagcacaccataaaaatacataatctcatgctagaaattgtataaaacagaaactcacaaccccgtttagtt 146  Q
    |||||||| |||| | ||||||||||||||  | ||   |||||||| | ||||||||  ||||||| ||||| ||||||||||||| ||  ||||||||    
T  20909982 gtgaaatacagagttaaacatcatgaacaaatagacacaaaaaatacttcatctcatgtcagaaattatataacacagaaactcacagccatgtttagtt 20910081  T
Q  147 cttcaattatttttaacccaaagataaaaacttttcaaaacaa-----aaattaacaacgaccaatcgagcaaatt 217  Q
    ||||||  |||||||| |||||| | |||||||||| ||| ||     ||||||||||| ||||||||||| ||||    
T  20910082 cttcaacaatttttaa-ccaaagct-aaaacttttccaaaaaataaataaattaacaaccaccaatcgagccaatt 20910155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 20924430 - 20924603
Alignment:
Q  47 gtgaaataaagagcttaacatcatgaacaagcacaccataaaaatacataatctcatgctagaaattgtataaaacagaaactcacaaccccgtttagtt 146  Q
    |||||||| |||| | ||||||||||||||  | ||   |||||||| | ||||||||  ||||||| ||||| ||||||||||||| ||  ||||||||    
T  20924430 gtgaaatacagagttaaacatcatgaacaaatagacacaaaaaatacttcatctcatgtcagaaattatataacacagaaactcacagccatgtttagtt 20924529  T
Q  147 cttcaattatttttaacccaaagataaaaacttttcaaaacaa-----aaattaacaacgaccaatcgagcaaatt 217  Q
    ||||||  |||||||| |||||| | |||||||||| ||| ||     ||||||||||| ||||||||||| ||||    
T  20924530 cttcaacaatttttaa-ccaaagct-aaaacttttccaaaaaataaataaattaacaaccaccaatcgagccaatt 20924603  T

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Target: chr7 (Bit Score: 123; Significance: 7e-63; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 18940018 - 18940219
Alignment:
Q  18 aaaacaaccaccataagtaacnnnnnnnngtgaaataaagagcttaacatcatgaacaagcacaccataaaaatacataatctcatgctagaaattgtat 117  Q
    |||||||||||||||||||||        |||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||||||||| |||    
T  18940018 aaaacaaccaccataagtaacaaaaaaaagtgaaatacagagcttaacatcatgaaaaaacacaccataaaaatatataatctcatgctagaaattatat 18940117  T
Q  118 aaaacagaaactcacaaccccgtttagttcttcaattatttttaacccaaagataaaaacttttcaaaacaaaaattaacaacgaccaatcgagcaaatt 217  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||  ||||| | ||| |||||||||||||||||||||||||||||||||||||||||    
T  18940118 aaaacagaaactcacaaccctgtttaattcttcaactatttttaa-tcaaagcttaaatcttttcaaaacaaaaattaacaacgaccaatcgagcaaatt 18940216  T
Q  218 gat 220  Q
    |||    
T  18940217 gat 18940219  T

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Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 7828428 - 7828600
Alignment:
Q  47 gtgaaataaagagcttaacatcatgaacaagcacaccataaaaatacataatctcatgctagaaattgtataaaacagaaactcacaaccccgtttagtt 146  Q
    |||||||| |||| | |||||||||||||| ||||||  ||||||||||  || ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  7828428 gtgaaatacagagttaaacatcatgaacaaacacacccaaaaaatacatcttcccatgctagaaattatataaaacagaaactcacagccccgtttagtt 7828527  T
Q  147 cttcaattatttttaacccaaagataaaaacttttcaaaacaaaaattaacaacgaccaatcgagcaaattgat 220  Q
    |||||| ||||||||| |||||| |||| |||||||||||||||||||||||| | ||||||||||||||||||    
T  7828528 cttcaactatttttaa-ccaaagctaaagacttttcaaaacaaaaattaacaatgcccaatcgagcaaattgat 7828600  T

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Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 53689890 - 53689760
Alignment:
Q  86 aaaaatacataatctcatgctagaaattgtataaaacagaaactcacaaccccgtttagttcttcaattatttttaacccaaagataaaaacttttcaaa 185  Q
    |||||||||| ||||||||  ||||||| | ||||||||||||||||| ||| |||||||| |||||  |||||||| |||||| |||||||||||| ||    
T  53689890 aaaaatacatcatctcatgtcagaaattatttaaaacagaaactcacagccctgtttagttattcaacaatttttaa-ccaaagctaaaaacttttccaa 53689792  T
Q  186 acaaaaattaacaacgaccaatcgagcaaatt 217  Q
    | || |||||||||| ||||||| ||||||||    
T  53689791 aaaagaattaacaaccaccaatctagcaaatt 53689760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 52311008 - 52311138
Alignment:
Q  86 aaaaatacataatctcatgctagaaattgtataaaacagaaactcacaaccccgtttagttcttcaattatttttaacccaaagataaaaacttttcaaa 185  Q
    |||||||||| |||||||| |||||||| | ||||||||||||||||| ||| |||||||| |||||  |||||||| |||||| ||||||   ||| ||    
T  52311008 aaaaatacatcatctcatgttagaaattatttaaaacagaaactcacagccctgtttagttattcaacaatttttaa-ccaaagctaaaaaaaattctaa 52311106  T
Q  186 acaaaaattaacaacgaccaatcgagcaaatt 217  Q
    | || |||||||||| ||||||| ||||||||    
T  52311107 aaaagaattaacaaccaccaatctagcaaatt 52311138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 12537670 - 12537746
Alignment:
Q  119 aaacagaaactcacaaccccgtttagttcttcaattatttttaacccaaagataaaaacttttcaaaacaaaaattaa 196  Q
    |||||||||||||||||||| ||||||||||||| ||||||||| | |||| || |||||||||||||||||||||||    
T  12537670 aaacagaaactcacaaccccatttagttcttcaactatttttaa-ctaaaggtagaaacttttcaaaacaaaaattaa 12537746  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 31688705 - 31688571
Alignment:
Q  86 aaaaatacataatctcatgctagaaattgtataaaacagaaactcacaaccccgtttagttcttcaattatttttaacccaaagataaaaacttttcaaa 185  Q
    ||||| |||||||| |||  |||||||| ||||||| | |||||||||||||| || |||||||||| |||||| || | |||| ||||||   || |||    
T  31688705 aaaaagacataatcgcatattagaaattatataaaataaaaactcacaaccccattaagttcttcaactattttgaa-ctaaagctaaaaaaaattaaaa 31688607  T
Q  186 acaaaaattaac-aacgaccaatcgagcaaattgat 220  Q
    |||||||||||| || ||  ||||||||||||||||    
T  31688606 acaaaaattaacaaatgatgaatcgagcaaattgat 31688571  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 31911871 - 31912005
Alignment:
Q  86 aaaaatacataatctcatgctagaaattgtataaaacagaaactcacaaccccgtttagttcttcaattatttttaacccaaagataaaaacttttcaaa 185  Q
    ||||| |||||||| |||  |||||||| ||||||| | |||||||||||||| || |||||||||| |||||| || | |||| ||||||   || |||    
T  31911871 aaaaagacataatcgcatattagaaattatataaaataaaaactcacaaccccattaagttcttcaactattttgaa-ctaaagctaaaaaaaattaaaa 31911969  T
Q  186 acaaaaattaac-aacgaccaatcgagcaaattgat 220  Q
    |||||||||||| || ||  ||||||||||||||||    
T  31911970 acaaaaattaacaaatgatgaatcgagcaaattgat 31912005  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 31945519 - 31945653
Alignment:
Q  86 aaaaatacataatctcatgctagaaattgtataaaacagaaactcacaaccccgtttagttcttcaattatttttaacccaaagataaaaacttttcaaa 185  Q
    ||||| |||||||| |||  |||||||| ||||||| | |||||||||||||| || |||||||||| |||||| || | |||| ||||||   || |||    
T  31945519 aaaaagacataatcgcatattagaaattatataaaataaaaactcacaaccccattaagttcttcaactattttgaa-ctaaagctaaaaaaaattaaaa 31945617  T
Q  186 acaaaaattaac-aacgaccaatcgagcaaattgat 220  Q
    |||||||||||| || ||  ||||||||||||||||    
T  31945618 acaaaaattaacaaatgatgaatcgagcaaattgat 31945653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 28912 - 28836
Alignment:
Q  119 aaacagaaactcacaaccccgtttagttcttcaattatttttaacccaaagataaaaacttttcaaaacaaaaattaa 196  Q
    |||||||||||||||||||| ||||||||||||| ||||||||| | |||| || |||||||||||||||||||||||    
T  28912 aaacagaaactcacaaccccatttagttcttcaactatttttaa-ctaaaggtagaaacttttcaaaacaaaaattaa 28836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 42391 - 42525
Alignment:
Q  86 aaaaatacataatctcatgctagaaattgtataaaacagaaactcacaaccccgtttagttcttcaattatttttaacccaaagataaaaacttttcaaa 185  Q
    ||||| |||||||| |||  |||||||| ||||||||| ||||||||||||||||| |||||||||| |||||| || | |||| ||||||   || |||    
T  42391 aaaaagacataatcgcatattagaaattatataaaacaaaaactcacaaccccgttaagttcttcaactattttgaa-ctaaagctaaaaaaaattaaaa 42489  T
Q  186 acaaaaattaac-aacgaccaatcgagcaaattgat 220  Q
    |||||||||||| || ||  ||||||||||||||||    
T  42490 acaaaaattaacaaatgatgaatcgagcaaattgat 42525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 35720 - 35854
Alignment:
Q  86 aaaaatacataatctcatgctagaaattgtataaaacagaaactcacaaccccgtttagttcttcaattatttttaacccaaagataaaaacttttcaaa 185  Q
    ||||| |||||||| |||  |||||||| ||||||||| ||||||||||||||||| | |||||||| |||||| || | |||| ||||||   || |||    
T  35720 aaaaagacataatcgcatattagaaattatataaaacaaaaactcacaaccccgttaaattcttcaactattttgaa-ctaaagctaaaaaaaattaaaa 35818  T
Q  186 acaaaaattaac-aacgaccaatcgagcaaattgat 220  Q
    |||||||||||| || ||  ||||||||||||||||    
T  35819 acaaaaattaacaaatgatgaatcgagcaaattgat 35854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 42313099 - 42313271
Alignment:
Q  47 gtgaaataaagagcttaacatcatgaacaagcacaccataaaaatacataatctcatgctagaaattgtataaaacagaaactcacaaccccgtttagtt 146  Q
    |||||||| |||||| ||||||||||||||  | || | |||||||||| |||| ||   ||||||| ||||| |||||||||||||| |  ||||||||    
T  42313099 gtgaaatacagagctaaacatcatgaacaaatagac-acaaaaatacatcatcttatatcagaaattatataacacagaaactcacaatcatgtttagtt 42313197  T
Q  147 cttcaattatttttaacccaaagataaaaacttttcaaaacaa-----aaattaacaacgaccaatcgagcaaatt 217  Q
    ||||||  |||||||| |||||| | |||||||||| ||| ||     ||||||||||| ||||||||||| ||||    
T  42313198 cttcaacaatttttaa-ccaaagct-aaaacttttccaaaaaataaataaattaacaaccaccaatcgagccaatt 42313271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 41326913 - 41327047
Alignment:
Q  86 aaaaatacataatctcatgctagaaattgtataaaacagaaactcacaaccccgtttagttcttcaattatttttaacccaaagataaaaacttttcaaa 185  Q
    |||||||||| |||||||    |||||| ||||| ||||||||||||||||  ||||||||||||||  |||||||| |||||| | |||||||||| ||    
T  41326913 aaaaatacatcatctcatatcggaaattatataacacagaaactcacaaccatgtttagttcttcaacaatttttaa-ccaaagct-aaaacttttccaa 41327010  T
Q  186 acaa-----aaattaacaacgaccaatcgagcaaatt 217  Q
    | ||     ||||||||||| ||||||||||| ||||    
T  41327011 aaaataaataaattaacaaccaccaatcgagccaatt 41327047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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