View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_80 (Length: 290)
Name: NF6641_high_80
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_80 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 139 - 283
Target Start/End: Original strand, 37893806 - 37893950
Alignment:
| Q |
139 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtgcaacaagaaccaaagaaagaaattgaagaagtgtctcaaaggaa |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893806 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtgcaacaagaaccaaagaaagaaattgaagaagtgtctcaaaggaa |
37893905 |
T |
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| Q |
239 |
gggaaaaggtaaagctgaggaattaaaagaagatattgatgatgt |
283 |
Q |
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| T |
37893906 |
gggaaaaggtaaagctgaggaattaaaagaagatattgatgatgt |
37893950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 139 - 283
Target Start/End: Original strand, 37188904 - 37189048
Alignment:
| Q |
139 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtgcaacaagaaccaaagaaagaaattgaagaagtgtctcaaaggaa |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37188904 |
ttcctcagaaaccaaacactgctcctcaagtttctgatcagaaaaaacaagtagtacatcaagaaccaaacaaagaaattgaagaagtgtctcaaaggaa |
37189003 |
T |
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| Q |
239 |
gggaaaaggtaaagctgaggaattaaaagaagatattgatgatgt |
283 |
Q |
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| T |
37189004 |
gggaaaaggtaaagctgaggaattaaaagaagatattgatgatgt |
37189048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 37893683 - 37893728
Alignment:
| Q |
16 |
aatttgaagctggaatcttatatattaagcttccaaaactcatcag |
61 |
Q |
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| T |
37893683 |
aatttgaagctggaatcttatatattaagcttccaaaactcatcag |
37893728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 37188781 - 37188825
Alignment:
| Q |
16 |
aatttgaagctggaatcttatatattaagcttccaaaactcatca |
60 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37188781 |
aatttgaagctggaatcttatatattaagcttccaaaactcatca |
37188825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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