View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_89 (Length: 266)
Name: NF6641_high_89
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_89 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 47390884 - 47391118
Alignment:
| Q |
16 |
atggaattcaatgtgaaaaatgagtcacacagattatggttgaaacatgttacttttattctgacatgaaacatgcaattccgatcaataaactcattct |
115 |
Q |
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| T |
47390884 |
atggaattcaatgtgaaaaatgagtcacacagattatggttgaaacatgttacttttattctgacatgaaacatgcaattccgatcaataaactcattct |
47390983 |
T |
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| Q |
116 |
atgcaaacagaggcaaaaccatattttcttttcctttttggtggtttgtgtgtggcattgtcaaaa-agatatatatataaataaaataaggggtgaaga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
47390984 |
atgcaaacagaggcaaaaccatattttcttttcctttttggtggtttgtgtgtggcattgtcaaaagatatatatatataaataaaataaggggtgaaga |
47391083 |
T |
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| Q |
215 |
gagaacctcagattctttttggcgctgcttattct |
249 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
47391084 |
gagaacctcagattctttttggcgctgcttattct |
47391118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 40625238 - 40625011
Alignment:
| Q |
16 |
atggaattcaatgtgaaaaatgagtcacacagattatggttgaaacatgttacttttattctgacatgaaacatgcaattccgatcaataaactcattct |
115 |
Q |
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||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
40625238 |
atggaattcaatgtgcaaaatgagtcacacacattacggttgaaacatgttacttttattctgacatgaaacgtgcaattccgatcaataaactc-ttct |
40625140 |
T |
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| Q |
116 |
atgcaaacagaggcaaaaccatattttcttttcctttttggtggtttgtgtgtggcattgtcaaaaagatatatatataaataaaataaggggtgaagag |
215 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| || | |||||||||||||||||||||||||||||| |
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| T |
40625139 |
atacaaacagaggcaaaaccatattttcttttcctttgtggtgg--taagtgtggcattgtc---aatagatatatataaataaaataaggggtgaagag |
40625045 |
T |
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| Q |
216 |
agaacctcagattctttttggcgctgcttattct |
249 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
40625044 |
agaacctcagcttctttttggcgctgcttattct |
40625011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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