View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6641_high_92 (Length: 257)
Name: NF6641_high_92
Description: NF6641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6641_high_92 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 37555620 - 37555853
Alignment:
| Q |
8 |
aacatgacacatcattattattatttttagaaaaattaattaatatgagaaatggaaacggtcatcgttcttctccatattgttacatatcgtgtatttc |
107 |
Q |
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| T |
37555620 |
aacatgacacgtcattattattatttttagaaaa-ttaattaatatgagaaatggaaacggtcatcgttcttctccatattgttacatatcgtgtatttc |
37555718 |
T |
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| Q |
108 |
aagttcccattatacggttgaagccatcttcttgtttcaacaatttatctccaatacgattctaaataatatgaatataaacacgtgttatttatttaac |
207 |
Q |
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| T |
37555719 |
aagttcccattatacggttgaagccatcttcttgtttcaacaatttatctccaatatgattctaaataatatgaatataaacacgtgttatttatttaac |
37555818 |
T |
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| Q |
208 |
acccttgtggatggtgatttcgattctgcaatctg |
242 |
Q |
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| T |
37555819 |
acccttgtggacggtgatttcgattctgcaatctg |
37555853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 40515405 - 40515640
Alignment:
| Q |
7 |
gaacatgacacatcattattattatttttagaaaaattaattaatatgagaaatggaaacggtcatcgttcttctccatattgttacatatcgtgtattt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40515405 |
gaacatgacacatcattattattatttttagaaaaattaattaatatgagaaatggaaacggtcatcgttcttctccatattgttacatatcgtgtattt |
40515504 |
T |
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| Q |
107 |
caagttcccattatacggttgaagccatcttcttgtttcaacaatttatctccaatacgattctaaataatatgaatataaacacgtgttatttatttaa |
206 |
Q |
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| T |
40515505 |
caagttcccattatgcggttgaagtcatcttcttgtttcaacaatttatctccaatttgattctaaataatatgaaaataaacatgtgttatttatttaa |
40515604 |
T |
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| Q |
207 |
cacccttgtggatggtgatttcgattctgcaatctg |
242 |
Q |
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| T |
40515605 |
cacccttgtggacggtgatttcgattatgcaatctg |
40515640 |
T |
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